==1187591== Memcheck, a memory error detector ==1187591== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1187591== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1187591== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==1187591== Parent PID: 1185596 ==1187591== ==1187591== ==1187591== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1187591== Open file descriptor 12: ==1187591== at 0xEBF522D: pipe (pipe.c:29) ==1187591== by 0x18AFA07D: ??? ==1187591== by 0x1410A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1187591== by 0x108C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1187591== by 0x1085CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1187591== by 0xF553D38: PetscInitialize (pinit.c:924) ==1187591== by 0xE4FA71D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1187591== by 0xE4FA76B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1187591== by 0x12CC48: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1187591== by 0x126C8F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1187591== by 0x129252: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1187591== by 0x1290F3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1187591== by 0x129789: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1187591== by 0x124FC0: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==1187591== ==1187591== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1187591== at 0xEBF9BCC: __open_nocancel (open64_nocancel.c:39) ==1187591== by 0xEB7DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1187591== by 0xE532822: ??? ==1187591== by 0xE53296F: ??? ==1187591== by 0x141AF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1187591== by 0x141AF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1187591== by 0x14165922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1187591== by 0x1410A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1187591== by 0x108C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1187591== by 0x1085CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1187591== by 0xF553D38: PetscInitialize (pinit.c:924) ==1187591== by 0xE4FA71D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1187591== by 0xE4FA76B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1187591== by 0x12CC48: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1187591== by 0x126C8F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1187591== by 0x129252: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1187591== by 0x1290F3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1187591== by 0x129789: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1187591== by 0x124FC0: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==1187591== ==1187591== Open file descriptor 114: ==1187591== ==1187591== ==1187591== Open file descriptor 110: ==1187591== ==1187591== ==1187591== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==1187591== ==1187591== ==1187591== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1187591== ==1187591== ==1187591== ==1187591== HEAP SUMMARY: ==1187591== in use at exit: 700,775 bytes in 9,378 blocks ==1187591== total heap usage: 1,126,050 allocs, 1,116,672 frees, 1,430,874,135 bytes allocated ==1187591== ==1187591== LEAK SUMMARY: ==1187591== definitely lost: 0 bytes in 0 blocks ==1187591== indirectly lost: 0 bytes in 0 blocks ==1187591== possibly lost: 0 bytes in 0 blocks ==1187591== still reachable: 56 bytes in 3 blocks ==1187591== suppressed: 700,719 bytes in 9,375 blocks ==1187591== Reachable blocks (those to which a pointer was found) are not shown. ==1187591== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1187591== ==1187591== For lists of detected and suppressed errors, rerun with: -s ==1187591== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 43)