==1328702== Memcheck, a memory error detector ==1328702== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1328702== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1328702== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1328702== Parent PID: 1310457 ==1328702== ==1328702== ==1328702== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1328702== Open file descriptor 12: ==1328702== at 0xEF5522D: pipe (pipe.c:29) ==1328702== by 0x18A6E07D: ??? ==1328702== by 0x1407C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1328702== by 0x10858418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1328702== by 0x107F1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1328702== by 0xF4E6D38: PetscInitialize (pinit.c:924) ==1328702== by 0xE85D20F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1328702== by 0xE85D25D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1328702== by 0x11BA32: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1328702== by 0x117353: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1328702== by 0x11963E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1328702== by 0x119539: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1328702== by 0x119B4D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1328702== by 0x115B55: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1328702== ==1328702== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1328702== at 0xEF59BCC: __open_nocancel (open64_nocancel.c:39) ==1328702== by 0xEEDDC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1328702== by 0xE892822: ??? ==1328702== by 0xE89296F: ??? ==1328702== by 0x141216DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1328702== by 0x14121938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1328702== by 0x140D7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1328702== by 0x1407C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1328702== by 0x10858418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1328702== by 0x107F1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1328702== by 0xF4E6D38: PetscInitialize (pinit.c:924) ==1328702== by 0xE85D20F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1328702== by 0xE85D25D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1328702== by 0x11BA32: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1328702== by 0x117353: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1328702== by 0x11963E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1328702== by 0x119539: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1328702== by 0x119B4D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1328702== by 0x115B55: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1328702== ==1328702== Open file descriptor 114: ==1328702== ==1328702== ==1328702== Open file descriptor 110: ==1328702== ==1328702== ==1328702== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1328702== ==1328702== ==1328702== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1328702== ==1328702== ==1328702== ==1328702== HEAP SUMMARY: ==1328702== in use at exit: 700,759 bytes in 9,378 blocks ==1328702== total heap usage: 2,085,982 allocs, 2,076,604 frees, 1,689,945,205 bytes allocated ==1328702== ==1328702== LEAK SUMMARY: ==1328702== definitely lost: 0 bytes in 0 blocks ==1328702== indirectly lost: 0 bytes in 0 blocks ==1328702== possibly lost: 0 bytes in 0 blocks ==1328702== still reachable: 56 bytes in 3 blocks ==1328702== suppressed: 700,703 bytes in 9,375 blocks ==1328702== Reachable blocks (those to which a pointer was found) are not shown. ==1328702== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1328702== ==1328702== For lists of detected and suppressed errors, rerun with: -s ==1328702== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)