==1434143== Memcheck, a memory error detector ==1434143== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1434143== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1434143== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==1434143== Parent PID: 1432588 ==1434143== ==1434143== ==1434143== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1434143== Open file descriptor 12: ==1434143== at 0xD2E622D: pipe (pipe.c:29) ==1434143== by 0x18AEF07D: ??? ==1434143== by 0x140A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1434143== by 0x10571418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1434143== by 0x1050AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1434143== by 0xF201D38: PetscInitialize (pinit.c:924) ==1434143== by 0xCEEE4FD: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1434143== by 0xCEEE54B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1434143== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1434143== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1434143== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1434143== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1434143== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1434143== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1434143== ==1434143== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1434143== at 0xD2EABCC: __open_nocancel (open64_nocancel.c:39) ==1434143== by 0xD26EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1434143== by 0xCF26822: ??? ==1434143== by 0xCF2696F: ??? ==1434143== by 0x1414E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1434143== by 0x1414E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1434143== by 0x14104922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1434143== by 0x140A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1434143== by 0x10571418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1434143== by 0x1050AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1434143== by 0xF201D38: PetscInitialize (pinit.c:924) ==1434143== by 0xCEEE4FD: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1434143== by 0xCEEE54B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1434143== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1434143== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1434143== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1434143== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1434143== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1434143== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==1434143== ==1434143== Open file descriptor 114: ==1434143== ==1434143== ==1434143== Open file descriptor 110: ==1434143== ==1434143== ==1434143== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==1434143== ==1434143== ==1434143== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1434143== ==1434143== ==1434143== ==1434143== HEAP SUMMARY: ==1434143== in use at exit: 700,743 bytes in 9,377 blocks ==1434143== total heap usage: 60,165 allocs, 50,788 frees, 1,354,331,563 bytes allocated ==1434143== ==1434143== LEAK SUMMARY: ==1434143== definitely lost: 0 bytes in 0 blocks ==1434143== indirectly lost: 0 bytes in 0 blocks ==1434143== possibly lost: 0 bytes in 0 blocks ==1434143== still reachable: 24 bytes in 2 blocks ==1434143== suppressed: 700,719 bytes in 9,375 blocks ==1434143== Reachable blocks (those to which a pointer was found) are not shown. ==1434143== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1434143== ==1434143== For lists of detected and suppressed errors, rerun with: -s ==1434143== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)