==1587701== Memcheck, a memory error detector ==1587701== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1587701== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1587701== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==1587701== Parent PID: 1587442 ==1587701== ==1587701== ==1587701== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1587701== Open file descriptor 12: ==1587701== at 0x647422D: pipe (pipe.c:29) ==1587701== by 0xAF5407D: ??? ==1587701== by 0x8F744CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1587701== by 0x666E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1587701== by 0x6607D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1587701== by 0x4AB5D38: PetscInitialize (pinit.c:924) ==1587701== by 0x49894FD: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1587701== by 0x498954B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1587701== by 0x125556: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1587701== by 0x11F315: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1587701== by 0x122042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1587701== by 0x121EE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1587701== by 0x122579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1587701== by 0x11D3A0: main (TestHdf5DataReader.cpp:19) ==1587701== ==1587701== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1587701== at 0x6478BCC: __open_nocancel (open64_nocancel.c:39) ==1587701== by 0x63FCC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1587701== by 0x5D3F822: ??? ==1587701== by 0x5D3F96F: ??? ==1587701== by 0x90196DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1587701== by 0x9019938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1587701== by 0x8FCF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1587701== by 0x8F742DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1587701== by 0x666E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1587701== by 0x6607D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1587701== by 0x4AB5D38: PetscInitialize (pinit.c:924) ==1587701== by 0x49894FD: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1587701== by 0x498954B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1587701== by 0x125556: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1587701== by 0x11F315: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1587701== by 0x122042: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1587701== by 0x121EE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1587701== by 0x122579: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1587701== by 0x11D3A0: main (TestHdf5DataReader.cpp:19) ==1587701== ==1587701== Open file descriptor 114: ==1587701== ==1587701== ==1587701== Open file descriptor 110: ==1587701== ==1587701== ==1587701== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==1587701== ==1587701== ==1587701== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1587701== ==1587701== ==1587701== ==1587701== HEAP SUMMARY: ==1587701== in use at exit: 700,775 bytes in 9,387 blocks ==1587701== total heap usage: 60,662 allocs, 51,275 frees, 1,363,804,652 bytes allocated ==1587701== ==1587701== LEAK SUMMARY: ==1587701== definitely lost: 0 bytes in 0 blocks ==1587701== indirectly lost: 0 bytes in 0 blocks ==1587701== possibly lost: 0 bytes in 0 blocks ==1587701== still reachable: 24 bytes in 2 blocks ==1587701== suppressed: 700,751 bytes in 9,385 blocks ==1587701== Reachable blocks (those to which a pointer was found) are not shown. ==1587701== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1587701== ==1587701== For lists of detected and suppressed errors, rerun with: -s ==1587701== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)