==1602930== Memcheck, a memory error detector ==1602930== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1602930== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1602930== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1602930== Parent PID: 1587442 ==1602930== ==1602930== ==1602930== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1602930== Open file descriptor 12: ==1602930== at 0xEFA022D: pipe (pipe.c:29) ==1602930== by 0x18AF907D: ??? ==1602930== by 0x141034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1602930== by 0x108C2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1602930== by 0x1085BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1602930== by 0xF550D38: PetscInitialize (pinit.c:924) ==1602930== by 0xE8A54FD: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1602930== by 0xE8A554B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1602930== by 0x126384: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1602930== by 0x12057D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1602930== by 0x122A3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1602930== by 0x122938: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1602930== by 0x122F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1602930== by 0x11ED80: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1602930== ==1602930== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1602930== at 0xEFA4BCC: __open_nocancel (open64_nocancel.c:39) ==1602930== by 0xEF28C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1602930== by 0xE8DD822: ??? ==1602930== by 0xE8DD96F: ??? ==1602930== by 0x141A86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1602930== by 0x141A8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1602930== by 0x1415E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1602930== by 0x141032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1602930== by 0x108C2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1602930== by 0x1085BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1602930== by 0xF550D38: PetscInitialize (pinit.c:924) ==1602930== by 0xE8A54FD: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1602930== by 0xE8A554B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1602930== by 0x126384: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1602930== by 0x12057D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1602930== by 0x122A3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1602930== by 0x122938: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1602930== by 0x122F4B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1602930== by 0x11ED80: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1602930== ==1602930== Open file descriptor 114: ==1602930== ==1602930== ==1602930== Open file descriptor 110: ==1602930== ==1602930== ==1602930== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1602930== ==1602930== ==1602930== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1602930== ==1602930== ==1602930== ==1602930== HEAP SUMMARY: ==1602930== in use at exit: 700,775 bytes in 9,378 blocks ==1602930== total heap usage: 2,084,757 allocs, 2,075,379 frees, 1,689,096,449 bytes allocated ==1602930== ==1602930== LEAK SUMMARY: ==1602930== definitely lost: 0 bytes in 0 blocks ==1602930== indirectly lost: 0 bytes in 0 blocks ==1602930== possibly lost: 0 bytes in 0 blocks ==1602930== still reachable: 56 bytes in 3 blocks ==1602930== suppressed: 700,719 bytes in 9,375 blocks ==1602930== Reachable blocks (those to which a pointer was found) are not shown. ==1602930== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1602930== ==1602930== For lists of detected and suppressed errors, rerun with: -s ==1602930== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)