==1680705== Memcheck, a memory error detector ==1680705== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1680705== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1680705== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1680705== Parent PID: 1664931 ==1680705== ==1680705== ==1680705== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1680705== Open file descriptor 12: ==1680705== at 0x105AB22D: pipe (pipe.c:29) ==1680705== by 0x1A73707D: ??? ==1680705== by 0x1593D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1680705== by 0x12206418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680705== by 0x1219FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680705== by 0x10E96D38: PetscInitialize (pinit.c:924) ==1680705== by 0xFD88FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1680705== by 0xFD8901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1680705== by 0x23B7F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1680705== by 0x2319C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1680705== by 0x2360FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1680705== by 0x235F9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1680705== by 0x236631: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1680705== by 0x22FCB5: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1680705== ==1680705== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1680705== at 0x105AFBCC: __open_nocancel (open64_nocancel.c:39) ==1680705== by 0x10533C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1680705== by 0xFDBD822: ??? ==1680705== by 0xFDBD96F: ??? ==1680705== by 0x159E26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680705== by 0x159E2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680705== by 0x15998922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680705== by 0x1593D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1680705== by 0x12206418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680705== by 0x1219FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680705== by 0x10E96D38: PetscInitialize (pinit.c:924) ==1680705== by 0xFD88FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1680705== by 0xFD8901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1680705== by 0x23B7F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1680705== by 0x2319C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1680705== by 0x2360FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1680705== by 0x235F9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1680705== by 0x236631: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1680705== by 0x22FCB5: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1680705== ==1680705== Open file descriptor 114: ==1680705== ==1680705== ==1680705== Open file descriptor 110: ==1680705== ==1680705== ==1680705== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==1680705== ==1680705== ==1680705== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1680705== ==1680705== ==1680705== ==1680705== HEAP SUMMARY: ==1680705== in use at exit: 700,704 bytes in 9,374 blocks ==1680705== total heap usage: 6,309,745 allocs, 6,300,371 frees, 2,072,732,130 bytes allocated ==1680705== ==1680705== LEAK SUMMARY: ==1680705== definitely lost: 0 bytes in 0 blocks ==1680705== indirectly lost: 0 bytes in 0 blocks ==1680705== possibly lost: 0 bytes in 0 blocks ==1680705== still reachable: 56 bytes in 3 blocks ==1680705== suppressed: 700,648 bytes in 9,371 blocks ==1680705== Reachable blocks (those to which a pointer was found) are not shown. ==1680705== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1680705== ==1680705== For lists of detected and suppressed errors, rerun with: -s ==1680705== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)