==1680347== Memcheck, a memory error detector ==1680347== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1680347== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1680347== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1680347== Parent PID: 1664931 ==1680347== ==1680347== ==1680347== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1680347== Open file descriptor 12: ==1680347== at 0x1007722D: pipe (pipe.c:29) ==1680347== by 0x18A7607D: ??? ==1680347== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1680347== by 0xF981418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680347== by 0xF91AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680347== by 0xE5F1D38: PetscInitialize (pinit.c:924) ==1680347== by 0xE4C8FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1680347== by 0xE4C901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1680347== by 0x1213E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1680347== by 0x11C9C5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1680347== by 0x11EFB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1680347== by 0x11EE54: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1680347== by 0x11F4EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1680347== by 0x11ACF5: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==1680347== ==1680347== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1680347== at 0x1007BBCC: __open_nocancel (open64_nocancel.c:39) ==1680347== by 0xFFFFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1680347== by 0xF87B822: ??? ==1680347== by 0xF87B96F: ??? ==1680347== by 0x140866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680347== by 0x14086938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680347== by 0x1403C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680347== by 0x13FE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1680347== by 0xF981418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680347== by 0xF91AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680347== by 0xE5F1D38: PetscInitialize (pinit.c:924) ==1680347== by 0xE4C8FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1680347== by 0xE4C901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1680347== by 0x1213E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1680347== by 0x11C9C5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1680347== by 0x11EFB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1680347== by 0x11EE54: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1680347== by 0x11F4EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1680347== by 0x11ACF5: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==1680347== ==1680347== Open file descriptor 114: ==1680347== ==1680347== ==1680347== Open file descriptor 110: ==1680347== ==1680347== ==1680347== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==1680347== ==1680347== ==1680347== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1680347== ==1680347== ==1680347== ==1680347== HEAP SUMMARY: ==1680347== in use at exit: 700,688 bytes in 9,374 blocks ==1680347== total heap usage: 3,339,570 allocs, 3,330,196 frees, 2,282,272,963 bytes allocated ==1680347== ==1680347== LEAK SUMMARY: ==1680347== definitely lost: 0 bytes in 0 blocks ==1680347== indirectly lost: 0 bytes in 0 blocks ==1680347== possibly lost: 0 bytes in 0 blocks ==1680347== still reachable: 56 bytes in 3 blocks ==1680347== suppressed: 700,632 bytes in 9,371 blocks ==1680347== Reachable blocks (those to which a pointer was found) are not shown. ==1680347== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1680347== ==1680347== For lists of detected and suppressed errors, rerun with: -s ==1680347== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)