==1680422== Memcheck, a memory error detector ==1680422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1680422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1680422== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1680422== Parent PID: 1664931 ==1680422== ==1680422== ==1680422== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1680422== Open file descriptor 12: ==1680422== at 0xEF5C22D: pipe (pipe.c:29) ==1680422== by 0x18A7507D: ??? ==1680422== by 0x1407C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1680422== by 0x1085F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680422== by 0x107F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680422== by 0xF4EDD38: PetscInitialize (pinit.c:924) ==1680422== by 0xE864FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1680422== by 0xE86501D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1680422== by 0x11BA32: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1680422== by 0x117353: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1680422== by 0x11963E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1680422== by 0x119539: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1680422== by 0x119B4D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1680422== by 0x115B55: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1680422== ==1680422== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1680422== at 0xEF60BCC: __open_nocancel (open64_nocancel.c:39) ==1680422== by 0xEEE4C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1680422== by 0xE899822: ??? ==1680422== by 0xE89996F: ??? ==1680422== by 0x141216DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680422== by 0x14121938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680422== by 0x140D7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680422== by 0x1407C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1680422== by 0x1085F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680422== by 0x107F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680422== by 0xF4EDD38: PetscInitialize (pinit.c:924) ==1680422== by 0xE864FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1680422== by 0xE86501D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1680422== by 0x11BA32: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1680422== by 0x117353: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1680422== by 0x11963E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1680422== by 0x119539: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1680422== by 0x119B4D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1680422== by 0x115B55: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1680422== ==1680422== Open file descriptor 114: ==1680422== ==1680422== ==1680422== Open file descriptor 110: ==1680422== ==1680422== ==1680422== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1680422== ==1680422== ==1680422== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1680422== ==1680422== ==1680422== ==1680422== HEAP SUMMARY: ==1680422== in use at exit: 700,759 bytes in 9,378 blocks ==1680422== total heap usage: 2,085,974 allocs, 2,076,596 frees, 1,689,939,768 bytes allocated ==1680422== ==1680422== LEAK SUMMARY: ==1680422== definitely lost: 0 bytes in 0 blocks ==1680422== indirectly lost: 0 bytes in 0 blocks ==1680422== possibly lost: 0 bytes in 0 blocks ==1680422== still reachable: 56 bytes in 3 blocks ==1680422== suppressed: 700,703 bytes in 9,375 blocks ==1680422== Reachable blocks (those to which a pointer was found) are not shown. ==1680422== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1680422== ==1680422== For lists of detected and suppressed errors, rerun with: -s ==1680422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)