==1680451== Memcheck, a memory error detector ==1680451== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1680451== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1680451== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1680451== Parent PID: 1664931 ==1680451== ==1680451== ==1680451== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1680451== Open file descriptor 12: ==1680451== at 0x1015E22D: pipe (pipe.c:29) ==1680451== by 0x18A7607D: ??? ==1680451== by 0x13FE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1680451== by 0xF981418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680451== by 0xF91AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680451== by 0xE5F1D38: PetscInitialize (pinit.c:924) ==1680451== by 0xE4C8FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1680451== by 0xE4C901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1680451== by 0x129A1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1680451== by 0x124BC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1680451== by 0x127242: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1680451== by 0x1270E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1680451== by 0x127779: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1680451== by 0x122EF5: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1680451== ==1680451== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1680451== at 0x10162BCC: __open_nocancel (open64_nocancel.c:39) ==1680451== by 0x100E6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1680451== by 0xF87B822: ??? ==1680451== by 0xF87B96F: ??? ==1680451== by 0x140866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680451== by 0x14086938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680451== by 0x1403C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1680451== by 0x13FE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1680451== by 0xF981418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680451== by 0xF91AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1680451== by 0xE5F1D38: PetscInitialize (pinit.c:924) ==1680451== by 0xE4C8FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1680451== by 0xE4C901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1680451== by 0x129A1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1680451== by 0x124BC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1680451== by 0x127242: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1680451== by 0x1270E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1680451== by 0x127779: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1680451== by 0x122EF5: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1680451== ==1680451== Open file descriptor 114: ==1680451== ==1680451== ==1680451== Open file descriptor 110: ==1680451== ==1680451== ==1680451== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1680451== ==1680451== ==1680451== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1680451== ==1680451== ==1680451== ==1680451== HEAP SUMMARY: ==1680451== in use at exit: 700,759 bytes in 9,378 blocks ==1680451== total heap usage: 1,400,153 allocs, 1,390,775 frees, 1,413,538,321 bytes allocated ==1680451== ==1680451== LEAK SUMMARY: ==1680451== definitely lost: 0 bytes in 0 blocks ==1680451== indirectly lost: 0 bytes in 0 blocks ==1680451== possibly lost: 0 bytes in 0 blocks ==1680451== still reachable: 56 bytes in 3 blocks ==1680451== suppressed: 700,703 bytes in 9,375 blocks ==1680451== Reachable blocks (those to which a pointer was found) are not shown. ==1680451== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1680451== ==1680451== For lists of detected and suppressed errors, rerun with: -s ==1680451== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)