==1736517== Memcheck, a memory error detector ==1736517== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1736517== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1736517== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1736517== Parent PID: 1721043 ==1736517== ==1736517== ==1736517== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1736517== Open file descriptor 12: ==1736517== at 0xD29722D: pipe (pipe.c:29) ==1736517== by 0x18A0407D: ??? ==1736517== by 0x140164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1736517== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1736517== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1736517== by 0xF47ED38: PetscInitialize (pinit.c:924) ==1736517== by 0xCB9DFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1736517== by 0xCB9E01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1736517== by 0x1238AC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1736517== by 0x11EDC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1736517== by 0x1213E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1736517== by 0x121286: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1736517== by 0x12191D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1736517== by 0x11D0F5: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==1736517== ==1736517== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1736517== at 0xD29BBCC: __open_nocancel (open64_nocancel.c:39) ==1736517== by 0xD21FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1736517== by 0xCBD2822: ??? ==1736517== by 0xCBD296F: ??? ==1736517== by 0x140BB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1736517== by 0x140BB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1736517== by 0x14071922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1736517== by 0x140162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1736517== by 0x107EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1736517== by 0x10787D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1736517== by 0xF47ED38: PetscInitialize (pinit.c:924) ==1736517== by 0xCB9DFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1736517== by 0xCB9E01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1736517== by 0x1238AC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1736517== by 0x11EDC5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1736517== by 0x1213E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1736517== by 0x121286: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1736517== by 0x12191D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1736517== by 0x11D0F5: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==1736517== ==1736517== Open file descriptor 114: ==1736517== ==1736517== ==1736517== Open file descriptor 110: ==1736517== ==1736517== ==1736517== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==1736517== ==1736517== ==1736517== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1736517== ==1736517== ==1736517== ==1736517== HEAP SUMMARY: ==1736517== in use at exit: 700,688 bytes in 9,374 blocks ==1736517== total heap usage: 40,688,637 allocs, 40,679,263 frees, 3,845,553,495 bytes allocated ==1736517== ==1736517== LEAK SUMMARY: ==1736517== definitely lost: 0 bytes in 0 blocks ==1736517== indirectly lost: 0 bytes in 0 blocks ==1736517== possibly lost: 0 bytes in 0 blocks ==1736517== still reachable: 56 bytes in 3 blocks ==1736517== suppressed: 700,632 bytes in 9,371 blocks ==1736517== Reachable blocks (those to which a pointer was found) are not shown. ==1736517== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1736517== ==1736517== For lists of detected and suppressed errors, rerun with: -s ==1736517== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)