==42577== Memcheck, a memory error detector ==42577== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==42577== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==42577== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==42577== Parent PID: 41049 ==42577== ==42577== ==42577== FILE DESCRIPTORS: 9 open (3 std) at exit. ==42577== Open file descriptor 12: ==42577== at 0xE6FF22D: pipe (pipe.c:29) ==42577== by 0x18A7507D: ??? ==42577== by 0x130174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42577== by 0xE34E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42577== by 0xE2E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42577== by 0xCFDED38: PetscInitialize (pinit.c:924) ==42577== by 0xCE53FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42577== by 0xCE5401D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42577== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==42577== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42577== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42577== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42577== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42577== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==42577== ==42577== Open file descriptor 8: /dev/shm/open_mpi.0000 ==42577== at 0xE703BCC: __open_nocancel (open64_nocancel.c:39) ==42577== by 0xE687C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==42577== by 0xCE88822: ??? ==42577== by 0xCE8896F: ??? ==42577== by 0x130BC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42577== by 0x130BC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42577== by 0x13072922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42577== by 0x130172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42577== by 0xE34E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42577== by 0xE2E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42577== by 0xCFDED38: PetscInitialize (pinit.c:924) ==42577== by 0xCE53FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42577== by 0xCE5401D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42577== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==42577== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42577== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42577== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42577== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42577== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==42577== ==42577== Open file descriptor 112: ==42577== ==42577== ==42577== Open file descriptor 109: ==42577== ==42577== ==42577== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==42577== ==42577== ==42577== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==42577== ==42577== ==42577== ==42577== HEAP SUMMARY: ==42577== in use at exit: 700,717 bytes in 9,377 blocks ==42577== total heap usage: 167,882 allocs, 158,505 frees, 1,364,677,557 bytes allocated ==42577== ==42577== LEAK SUMMARY: ==42577== definitely lost: 0 bytes in 0 blocks ==42577== indirectly lost: 0 bytes in 0 blocks ==42577== possibly lost: 0 bytes in 0 blocks ==42577== still reachable: 24 bytes in 2 blocks ==42577== suppressed: 700,693 bytes in 9,375 blocks ==42577== Reachable blocks (those to which a pointer was found) are not shown. ==42577== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==42577== ==42577== For lists of detected and suppressed errors, rerun with: -s ==42577== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)