==57094== Memcheck, a memory error detector ==57094== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==57094== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==57094== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==57094== Parent PID: 41049 ==57094== ==57094== ==57094== FILE DESCRIPTORS: 9 open (3 std) at exit. ==57094== Open file descriptor 12: ==57094== at 0x1193722D: pipe (pipe.c:29) ==57094== by 0x1A73607D: ??? ==57094== by 0x1589A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==57094== by 0x11241418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==57094== by 0x111DAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==57094== by 0xFEB1D38: PetscInitialize (pinit.c:924) ==57094== by 0xFD88FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==57094== by 0xFD8901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==57094== by 0x123E71: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==57094== by 0x11F753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==57094== by 0x1219BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==57094== by 0x1218B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==57094== by 0x121ECB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==57094== by 0x11DF55: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==57094== ==57094== Open file descriptor 8: /dev/shm/open_mpi.0000 ==57094== at 0x1193BBCC: __open_nocancel (open64_nocancel.c:39) ==57094== by 0x118BFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==57094== by 0x1113B822: ??? ==57094== by 0x1113B96F: ??? ==57094== by 0x1593F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==57094== by 0x1593F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==57094== by 0x158F5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==57094== by 0x1589A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==57094== by 0x11241418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==57094== by 0x111DAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==57094== by 0xFEB1D38: PetscInitialize (pinit.c:924) ==57094== by 0xFD88FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==57094== by 0xFD8901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==57094== by 0x123E71: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==57094== by 0x11F753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==57094== by 0x1219BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==57094== by 0x1218B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==57094== by 0x121ECB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==57094== by 0x11DF55: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==57094== ==57094== Open file descriptor 112: ==57094== ==57094== ==57094== Open file descriptor 109: ==57094== ==57094== ==57094== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==57094== ==57094== ==57094== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==57094== ==57094== ==57094== ==57094== HEAP SUMMARY: ==57094== in use at exit: 700,700 bytes in 9,374 blocks ==57094== total heap usage: 16,188,004 allocs, 16,178,630 frees, 2,845,004,879 bytes allocated ==57094== ==57094== LEAK SUMMARY: ==57094== definitely lost: 0 bytes in 0 blocks ==57094== indirectly lost: 0 bytes in 0 blocks ==57094== possibly lost: 0 bytes in 0 blocks ==57094== still reachable: 56 bytes in 3 blocks ==57094== suppressed: 700,644 bytes in 9,371 blocks ==57094== Reachable blocks (those to which a pointer was found) are not shown. ==57094== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==57094== ==57094== For lists of detected and suppressed errors, rerun with: -s ==57094== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)