==99748== Memcheck, a memory error detector ==99748== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==99748== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==99748== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==99748== Parent PID: 97252 ==99748== ==99748== ==99748== FILE DESCRIPTORS: 9 open (3 std) at exit. ==99748== Open file descriptor 12: ==99748== at 0xF16722D: pipe (pipe.c:29) ==99748== by 0x18A7507D: ??? ==99748== by 0x1419C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==99748== by 0x10DC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==99748== by 0x10D5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==99748== by 0xFA52D38: PetscInitialize (pinit.c:924) ==99748== by 0xE4C8FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==99748== by 0xE4C901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==99748== by 0x1D25F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==99748== by 0x1CBF89: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==99748== by 0x1CF724: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==99748== by 0x1CF5C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==99748== by 0x1CFC5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==99748== by 0x1CA275: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==99748== ==99748== Open file descriptor 8: /dev/shm/open_mpi.0000 ==99748== at 0xF16BBCC: __open_nocancel (open64_nocancel.c:39) ==99748== by 0xF0EFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==99748== by 0xE4FD822: ??? ==99748== by 0xE4FD96F: ??? ==99748== by 0x142416DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==99748== by 0x14241938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==99748== by 0x141F7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==99748== by 0x1419C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==99748== by 0x10DC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==99748== by 0x10D5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==99748== by 0xFA52D38: PetscInitialize (pinit.c:924) ==99748== by 0xE4C8FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==99748== by 0xE4C901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==99748== by 0x1D25F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==99748== by 0x1CBF89: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==99748== by 0x1CF724: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==99748== by 0x1CF5C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==99748== by 0x1CFC5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==99748== by 0x1CA275: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==99748== ==99748== Open file descriptor 112: ==99748== ==99748== ==99748== Open file descriptor 109: ==99748== ==99748== ==99748== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==99748== ==99748== ==99748== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==99748== ==99748== ==99748== ==99748== HEAP SUMMARY: ==99748== in use at exit: 700,684 bytes in 9,374 blocks ==99748== total heap usage: 7,097,320 allocs, 7,087,946 frees, 8,099,000,129 bytes allocated ==99748== ==99748== LEAK SUMMARY: ==99748== definitely lost: 0 bytes in 0 blocks ==99748== indirectly lost: 0 bytes in 0 blocks ==99748== possibly lost: 0 bytes in 0 blocks ==99748== still reachable: 56 bytes in 3 blocks ==99748== suppressed: 700,628 bytes in 9,371 blocks ==99748== Reachable blocks (those to which a pointer was found) are not shown. ==99748== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==99748== ==99748== For lists of detected and suppressed errors, rerun with: -s ==99748== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)