==98816== Memcheck, a memory error detector ==98816== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==98816== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==98816== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==98816== Parent PID: 97252 ==98816== ==98816== ==98816== FILE DESCRIPTORS: 9 open (3 std) at exit. ==98816== Open file descriptor 12: ==98816== at 0xD2BB22D: pipe (pipe.c:29) ==98816== by 0x18A7507D: ??? ==98816== by 0x1402B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==98816== by 0x10518418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==98816== by 0x104B1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==98816== by 0xF1A8D38: PetscInitialize (pinit.c:924) ==98816== by 0xCEC6FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==98816== by 0xCEC701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==98816== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==98816== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==98816== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==98816== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==98816== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==98816== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==98816== ==98816== Open file descriptor 8: /dev/shm/open_mpi.0000 ==98816== at 0xD2BFBCC: __open_nocancel (open64_nocancel.c:39) ==98816== by 0xD243C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==98816== by 0xCEFB822: ??? ==98816== by 0xCEFB96F: ??? ==98816== by 0x140D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==98816== by 0x140D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==98816== by 0x14086922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==98816== by 0x1402B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==98816== by 0x10518418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==98816== by 0x104B1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==98816== by 0xF1A8D38: PetscInitialize (pinit.c:924) ==98816== by 0xCEC6FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==98816== by 0xCEC701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==98816== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==98816== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==98816== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==98816== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==98816== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==98816== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==98816== ==98816== Open file descriptor 112: ==98816== ==98816== ==98816== Open file descriptor 109: ==98816== ==98816== ==98816== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==98816== ==98816== ==98816== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==98816== ==98816== ==98816== ==98816== HEAP SUMMARY: ==98816== in use at exit: 700,717 bytes in 9,377 blocks ==98816== total heap usage: 60,195 allocs, 50,818 frees, 1,354,349,549 bytes allocated ==98816== ==98816== LEAK SUMMARY: ==98816== definitely lost: 0 bytes in 0 blocks ==98816== indirectly lost: 0 bytes in 0 blocks ==98816== possibly lost: 0 bytes in 0 blocks ==98816== still reachable: 24 bytes in 2 blocks ==98816== suppressed: 700,693 bytes in 9,375 blocks ==98816== Reachable blocks (those to which a pointer was found) are not shown. ==98816== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==98816== ==98816== For lists of detected and suppressed errors, rerun with: -s ==98816== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)