==169589== Memcheck, a memory error detector ==169589== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==169589== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==169589== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==169589== Parent PID: 153476 ==169589== ==169589== ==169589== FILE DESCRIPTORS: 9 open (3 std) at exit. ==169589== Open file descriptor 12: ==169589== at 0x1193722D: pipe (pipe.c:29) ==169589== by 0x1A73607D: ??? ==169589== by 0x1589A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==169589== by 0x11241418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==169589== by 0x111DAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==169589== by 0xFEB1D38: PetscInitialize (pinit.c:924) ==169589== by 0xFD88FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==169589== by 0xFD8901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==169589== by 0x11FDE3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==169589== by 0x11B653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==169589== by 0x11D8EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==169589== by 0x11D7EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==169589== by 0x11DDFD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==169589== by 0x119E55: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==169589== ==169589== Open file descriptor 8: /dev/shm/open_mpi.0000 ==169589== at 0x1193BBCC: __open_nocancel (open64_nocancel.c:39) ==169589== by 0x118BFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==169589== by 0x1113B822: ??? ==169589== by 0x1113B96F: ??? ==169589== by 0x1593F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==169589== by 0x1593F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==169589== by 0x158F5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==169589== by 0x1589A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==169589== by 0x11241418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==169589== by 0x111DAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==169589== by 0xFEB1D38: PetscInitialize (pinit.c:924) ==169589== by 0xFD88FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==169589== by 0xFD8901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==169589== by 0x11FDE3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==169589== by 0x11B653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==169589== by 0x11D8EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==169589== by 0x11D7EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==169589== by 0x11DDFD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==169589== by 0x119E55: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==169589== ==169589== Open file descriptor 112: ==169589== ==169589== ==169589== Open file descriptor 109: ==169589== ==169589== ==169589== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==169589== ==169589== ==169589== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==169589== ==169589== ==169589== ==169589== HEAP SUMMARY: ==169589== in use at exit: 700,850 bytes in 9,379 blocks ==169589== total heap usage: 1,620,480 allocs, 1,611,101 frees, 1,473,826,368 bytes allocated ==169589== ==169589== LEAK SUMMARY: ==169589== definitely lost: 0 bytes in 0 blocks ==169589== indirectly lost: 0 bytes in 0 blocks ==169589== possibly lost: 0 bytes in 0 blocks ==169589== still reachable: 136 bytes in 4 blocks ==169589== suppressed: 700,714 bytes in 9,375 blocks ==169589== Reachable blocks (those to which a pointer was found) are not shown. ==169589== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==169589== ==169589== For lists of detected and suppressed errors, rerun with: -s ==169589== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 38 from 38)