==211185== Memcheck, a memory error detector ==211185== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==211185== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==211185== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==211185== Parent PID: 209663 ==211185== ==211185== ==211185== FILE DESCRIPTORS: 9 open (3 std) at exit. ==211185== Open file descriptor 12: ==211185== at 0xE6FF22D: pipe (pipe.c:29) ==211185== by 0x18A7507D: ??? ==211185== by 0x130174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==211185== by 0xE34E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==211185== by 0xE2E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==211185== by 0xCFDED38: PetscInitialize (pinit.c:924) ==211185== by 0xCE53FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==211185== by 0xCE5401D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==211185== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==211185== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==211185== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==211185== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==211185== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==211185== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==211185== ==211185== Open file descriptor 8: /dev/shm/open_mpi.0000 ==211185== at 0xE703BCC: __open_nocancel (open64_nocancel.c:39) ==211185== by 0xE687C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==211185== by 0xCE88822: ??? ==211185== by 0xCE8896F: ??? ==211185== by 0x130BC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==211185== by 0x130BC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==211185== by 0x13072922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==211185== by 0x130172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==211185== by 0xE34E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==211185== by 0xE2E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==211185== by 0xCFDED38: PetscInitialize (pinit.c:924) ==211185== by 0xCE53FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==211185== by 0xCE5401D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==211185== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==211185== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==211185== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==211185== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==211185== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==211185== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==211185== ==211185== Open file descriptor 112: ==211185== ==211185== ==211185== Open file descriptor 109: ==211185== ==211185== ==211185== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==211185== ==211185== ==211185== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==211185== ==211185== ==211185== ==211185== HEAP SUMMARY: ==211185== in use at exit: 700,722 bytes in 9,377 blocks ==211185== total heap usage: 167,879 allocs, 158,502 frees, 1,364,677,976 bytes allocated ==211185== ==211185== LEAK SUMMARY: ==211185== definitely lost: 0 bytes in 0 blocks ==211185== indirectly lost: 0 bytes in 0 blocks ==211185== possibly lost: 0 bytes in 0 blocks ==211185== still reachable: 24 bytes in 2 blocks ==211185== suppressed: 700,698 bytes in 9,375 blocks ==211185== Reachable blocks (those to which a pointer was found) are not shown. ==211185== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==211185== ==211185== For lists of detected and suppressed errors, rerun with: -s ==211185== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 39)