==496684== Memcheck, a memory error detector ==496684== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==496684== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==496684== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==496684== Parent PID: 496422 ==496684== ==496684== Warning: invalid file descriptor -1 in syscall close() ==496684== ==496684== FILE DESCRIPTORS: 9 open (3 std) at exit. ==496684== Open file descriptor 12: ==496684== at 0x658B22D: pipe (pipe.c:29) ==496684== by 0xAF1407D: ??? ==496684== by 0x8F344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==496684== by 0x61DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==496684== by 0x6175D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==496684== by 0x4A95D38: PetscInitialize (pinit.c:924) ==496684== by 0x496CFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==496684== by 0x496D01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==496684== by 0x11BF1A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==496684== by 0x116F45: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==496684== by 0x119E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==496684== by 0x119D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==496684== by 0x11A3A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==496684== by 0x115275: main (TestHdf5DataWriter.cpp:19) ==496684== ==496684== Open file descriptor 8: /dev/shm/open_mpi.0000 ==496684== at 0x658FBCC: __open_nocancel (open64_nocancel.c:39) ==496684== by 0x6513C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==496684== by 0x5D1F822: ??? ==496684== by 0x5D1F96F: ??? ==496684== by 0x8FD96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==496684== by 0x8FD9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==496684== by 0x8F8F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==496684== by 0x8F342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==496684== by 0x61DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==496684== by 0x6175D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==496684== by 0x4A95D38: PetscInitialize (pinit.c:924) ==496684== by 0x496CFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==496684== by 0x496D01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==496684== by 0x11BF1A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==496684== by 0x116F45: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==496684== by 0x119E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==496684== by 0x119D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==496684== by 0x11A3A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==496684== by 0x115275: main (TestHdf5DataWriter.cpp:19) ==496684== ==496684== Open file descriptor 115: ==496684== ==496684== ==496684== Open file descriptor 111: ==496684== ==496684== ==496684== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==496684== ==496684== ==496684== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==496684== ==496684== ==496684== ==496684== HEAP SUMMARY: ==496684== in use at exit: 700,754 bytes in 9,387 blocks ==496684== total heap usage: 117,282 allocs, 107,895 frees, 1,427,865,469 bytes allocated ==496684== ==496684== LEAK SUMMARY: ==496684== definitely lost: 0 bytes in 0 blocks ==496684== indirectly lost: 0 bytes in 0 blocks ==496684== possibly lost: 0 bytes in 0 blocks ==496684== still reachable: 24 bytes in 2 blocks ==496684== suppressed: 700,730 bytes in 9,385 blocks ==496684== Reachable blocks (those to which a pointer was found) are not shown. ==496684== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==496684== ==496684== For lists of detected and suppressed errors, rerun with: -s ==496684== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)