==497985== Memcheck, a memory error detector ==497985== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==497985== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==497985== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==497985== Parent PID: 496422 ==497985== ==497985== ==497985== FILE DESCRIPTORS: 9 open (3 std) at exit. ==497985== Open file descriptor 12: ==497985== at 0xD24A22D: pipe (pipe.c:29) ==497985== by 0x18A0407D: ??? ==497985== by 0x13FC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==497985== by 0x104A7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==497985== by 0x10440D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==497985== by 0xF137D38: PetscInitialize (pinit.c:924) ==497985== by 0xCE55FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==497985== by 0xCE5601D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==497985== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==497985== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==497985== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==497985== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==497985== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==497985== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==497985== ==497985== Open file descriptor 8: /dev/shm/open_mpi.0000 ==497985== at 0xD24EBCC: __open_nocancel (open64_nocancel.c:39) ==497985== by 0xD1D2C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==497985== by 0xCE8A822: ??? ==497985== by 0xCE8A96F: ??? ==497985== by 0x1406E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==497985== by 0x1406E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==497985== by 0x14024922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==497985== by 0x13FC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==497985== by 0x104A7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==497985== by 0x10440D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==497985== by 0xF137D38: PetscInitialize (pinit.c:924) ==497985== by 0xCE55FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==497985== by 0xCE5601D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==497985== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==497985== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==497985== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==497985== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==497985== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==497985== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==497985== ==497985== Open file descriptor 115: ==497985== ==497985== ==497985== Open file descriptor 111: ==497985== ==497985== ==497985== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==497985== ==497985== ==497985== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==497985== ==497985== ==497985== ==497985== HEAP SUMMARY: ==497985== in use at exit: 700,722 bytes in 9,377 blocks ==497985== total heap usage: 60,167 allocs, 50,790 frees, 1,354,347,136 bytes allocated ==497985== ==497985== LEAK SUMMARY: ==497985== definitely lost: 0 bytes in 0 blocks ==497985== indirectly lost: 0 bytes in 0 blocks ==497985== possibly lost: 0 bytes in 0 blocks ==497985== still reachable: 24 bytes in 2 blocks ==497985== suppressed: 700,698 bytes in 9,375 blocks ==497985== Reachable blocks (those to which a pointer was found) are not shown. ==497985== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==497985== ==497985== For lists of detected and suppressed errors, rerun with: -s ==497985== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)