==554528== Memcheck, a memory error detector ==554528== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==554528== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==554528== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==554528== Parent PID: 552546 ==554528== ==554528== ==554528== FILE DESCRIPTORS: 9 open (3 std) at exit. ==554528== Open file descriptor 12: ==554528== at 0x1013022D: pipe (pipe.c:29) ==554528== by 0x18A0507D: ??? ==554528== by 0x13F684CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==554528== by 0xF953418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==554528== by 0xF8ECD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==554528== by 0xE5E3D38: PetscInitialize (pinit.c:924) ==554528== by 0xE458FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==554528== by 0xE45901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==554528== by 0x1FF501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==554528== by 0x1F9477: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==554528== by 0x1FC78C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==554528== by 0x1FC688: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==554528== by 0x1FCC9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==554528== by 0x1F7C35: main (TestOffLatticeSimulation3d.cpp:18) ==554528== ==554528== Open file descriptor 8: /dev/shm/open_mpi.0000 ==554528== at 0x10134BCC: __open_nocancel (open64_nocancel.c:39) ==554528== by 0x100B8C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==554528== by 0xE48D822: ??? ==554528== by 0xE48D96F: ??? ==554528== by 0x1400F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==554528== by 0x1400F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==554528== by 0x13FC5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==554528== by 0x13F682DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==554528== by 0xF953418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==554528== by 0xF8ECD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==554528== by 0xE5E3D38: PetscInitialize (pinit.c:924) ==554528== by 0xE458FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==554528== by 0xE45901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==554528== by 0x1FF501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==554528== by 0x1F9477: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==554528== by 0x1FC78C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==554528== by 0x1FC688: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==554528== by 0x1FCC9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==554528== by 0x1F7C35: main (TestOffLatticeSimulation3d.cpp:18) ==554528== ==554528== Open file descriptor 115: ==554528== ==554528== ==554528== Open file descriptor 111: ==554528== ==554528== ==554528== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==554528== ==554528== ==554528== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==554528== ==554528== ==554528== ==554528== HEAP SUMMARY: ==554528== in use at exit: 700,754 bytes in 9,378 blocks ==554528== total heap usage: 856,177 allocs, 846,799 frees, 1,519,103,587 bytes allocated ==554528== ==554528== LEAK SUMMARY: ==554528== definitely lost: 0 bytes in 0 blocks ==554528== indirectly lost: 0 bytes in 0 blocks ==554528== possibly lost: 0 bytes in 0 blocks ==554528== still reachable: 56 bytes in 3 blocks ==554528== suppressed: 700,698 bytes in 9,375 blocks ==554528== Reachable blocks (those to which a pointer was found) are not shown. ==554528== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==554528== ==554528== For lists of detected and suppressed errors, rerun with: -s ==554528== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)