==567997== Memcheck, a memory error detector ==567997== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==567997== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==567997== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==567997== Parent PID: 552546 ==567997== ==567997== ==567997== FILE DESCRIPTORS: 9 open (3 std) at exit. ==567997== Open file descriptor 12: ==567997== at 0xD29822D: pipe (pipe.c:29) ==567997== by 0x18A0607D: ??? ==567997== by 0x140164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==567997== by 0x107EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==567997== by 0x10788D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==567997== by 0xF47FD38: PetscInitialize (pinit.c:924) ==567997== by 0xCB9EFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==567997== by 0xCB9F01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==567997== by 0x12388C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==567997== by 0x11EDA5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==567997== by 0x1213C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==567997== by 0x121266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==567997== by 0x1218FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==567997== by 0x11D0D5: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==567997== ==567997== Open file descriptor 8: /dev/shm/open_mpi.0000 ==567997== at 0xD29CBCC: __open_nocancel (open64_nocancel.c:39) ==567997== by 0xD220C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==567997== by 0xCBD3822: ??? ==567997== by 0xCBD396F: ??? ==567997== by 0x140BB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==567997== by 0x140BB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==567997== by 0x14071922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==567997== by 0x140162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==567997== by 0x107EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==567997== by 0x10788D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==567997== by 0xF47FD38: PetscInitialize (pinit.c:924) ==567997== by 0xCB9EFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==567997== by 0xCB9F01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==567997== by 0x12388C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==567997== by 0x11EDA5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==567997== by 0x1213C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==567997== by 0x121266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==567997== by 0x1218FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==567997== by 0x11D0D5: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==567997== ==567997== Open file descriptor 115: ==567997== ==567997== ==567997== Open file descriptor 111: ==567997== ==567997== ==567997== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==567997== ==567997== ==567997== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==567997== ==567997== ==567997== ==567997== HEAP SUMMARY: ==567997== in use at exit: 700,686 bytes in 9,374 blocks ==567997== total heap usage: 40,688,635 allocs, 40,679,261 frees, 3,845,554,590 bytes allocated ==567997== ==567997== LEAK SUMMARY: ==567997== definitely lost: 0 bytes in 0 blocks ==567997== indirectly lost: 0 bytes in 0 blocks ==567997== possibly lost: 0 bytes in 0 blocks ==567997== still reachable: 56 bytes in 3 blocks ==567997== suppressed: 700,630 bytes in 9,371 blocks ==567997== Reachable blocks (those to which a pointer was found) are not shown. ==567997== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==567997== ==567997== For lists of detected and suppressed errors, rerun with: -s ==567997== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)