==613950== Memcheck, a memory error detector ==613950== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==613950== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==613950== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==613950== Parent PID: 612413 ==613950== ==613950== ==613950== FILE DESCRIPTORS: 9 open (3 std) at exit. ==613950== Open file descriptor 12: ==613950== at 0xE68F22D: pipe (pipe.c:29) ==613950== by 0x18A0607D: ??? ==613950== by 0x12FA84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==613950== by 0xE2DE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==613950== by 0xE277D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==613950== by 0xCF6ED38: PetscInitialize (pinit.c:924) ==613950== by 0xCDE3FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==613950== by 0xCDE401D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==613950== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==613950== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==613950== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==613950== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==613950== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==613950== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==613950== ==613950== Open file descriptor 8: /dev/shm/open_mpi.0000 ==613950== at 0xE693BCC: __open_nocancel (open64_nocancel.c:39) ==613950== by 0xE617C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==613950== by 0xCE18822: ??? ==613950== by 0xCE1896F: ??? ==613950== by 0x1304D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==613950== by 0x1304D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==613950== by 0x13003922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==613950== by 0x12FA82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==613950== by 0xE2DE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==613950== by 0xE277D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==613950== by 0xCF6ED38: PetscInitialize (pinit.c:924) ==613950== by 0xCDE3FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==613950== by 0xCDE401D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==613950== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==613950== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==613950== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==613950== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==613950== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==613950== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==613950== ==613950== Open file descriptor 115: ==613950== ==613950== ==613950== Open file descriptor 111: ==613950== ==613950== ==613950== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==613950== ==613950== ==613950== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==613950== ==613950== ==613950== ==613950== HEAP SUMMARY: ==613950== in use at exit: 700,722 bytes in 9,377 blocks ==613950== total heap usage: 167,851 allocs, 158,474 frees, 1,364,675,828 bytes allocated ==613950== ==613950== LEAK SUMMARY: ==613950== definitely lost: 0 bytes in 0 blocks ==613950== indirectly lost: 0 bytes in 0 blocks ==613950== possibly lost: 0 bytes in 0 blocks ==613950== still reachable: 24 bytes in 2 blocks ==613950== suppressed: 700,698 bytes in 9,375 blocks ==613950== Reachable blocks (those to which a pointer was found) are not shown. ==613950== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==613950== ==613950== For lists of detected and suppressed errors, rerun with: -s ==613950== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)