==628427== Memcheck, a memory error detector ==628427== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==628427== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==628427== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==628427== Parent PID: 612413 ==628427== ==628427== ==628427== FILE DESCRIPTORS: 9 open (3 std) at exit. ==628427== Open file descriptor 12: ==628427== at 0x118C822D: pipe (pipe.c:29) ==628427== by 0x1A6C707D: ??? ==628427== by 0x1582B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==628427== by 0x111D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==628427== by 0x1116BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==628427== by 0xFE42D38: PetscInitialize (pinit.c:924) ==628427== by 0xFD19FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==628427== by 0xFD1A01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==628427== by 0x123E51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==628427== by 0x11F733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==628427== by 0x12199C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==628427== by 0x121898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==628427== by 0x121EAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==628427== by 0x11DF35: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==628427== ==628427== Open file descriptor 8: /dev/shm/open_mpi.0000 ==628427== at 0x118CCBCC: __open_nocancel (open64_nocancel.c:39) ==628427== by 0x11850C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==628427== by 0x110CC822: ??? ==628427== by 0x110CC96F: ??? ==628427== by 0x158D06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==628427== by 0x158D0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==628427== by 0x15886922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==628427== by 0x1582B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==628427== by 0x111D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==628427== by 0x1116BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==628427== by 0xFE42D38: PetscInitialize (pinit.c:924) ==628427== by 0xFD19FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==628427== by 0xFD1A01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==628427== by 0x123E51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==628427== by 0x11F733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==628427== by 0x12199C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==628427== by 0x121898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==628427== by 0x121EAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==628427== by 0x11DF35: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==628427== ==628427== Open file descriptor 115: ==628427== ==628427== ==628427== Open file descriptor 111: ==628427== ==628427== ==628427== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==628427== ==628427== ==628427== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==628427== ==628427== ==628427== ==628427== HEAP SUMMARY: ==628427== in use at exit: 700,702 bytes in 9,374 blocks ==628427== total heap usage: 16,187,973 allocs, 16,178,599 frees, 2,845,003,543 bytes allocated ==628427== ==628427== LEAK SUMMARY: ==628427== definitely lost: 0 bytes in 0 blocks ==628427== indirectly lost: 0 bytes in 0 blocks ==628427== possibly lost: 0 bytes in 0 blocks ==628427== still reachable: 56 bytes in 3 blocks ==628427== suppressed: 700,646 bytes in 9,371 blocks ==628427== Reachable blocks (those to which a pointer was found) are not shown. ==628427== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==628427== ==628427== For lists of detected and suppressed errors, rerun with: -s ==628427== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)