==668711== Memcheck, a memory error detector ==668711== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==668711== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==668711== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==668711== Parent PID: 668451 ==668711== ==668711== Warning: invalid file descriptor -1 in syscall close() ==668711== ==668711== FILE DESCRIPTORS: 9 open (3 std) at exit. ==668711== Open file descriptor 12: ==668711== at 0x658B22D: pipe (pipe.c:29) ==668711== by 0xAF1407D: ??? ==668711== by 0x8F344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==668711== by 0x61DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==668711== by 0x6175D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==668711== by 0x4A95D38: PetscInitialize (pinit.c:924) ==668711== by 0x496CFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==668711== by 0x496D01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==668711== by 0x11BF1A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==668711== by 0x116F45: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==668711== by 0x119E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==668711== by 0x119D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==668711== by 0x11A3A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==668711== by 0x115275: main (TestHdf5DataWriter.cpp:19) ==668711== ==668711== Open file descriptor 8: /dev/shm/open_mpi.0000 ==668711== at 0x658FBCC: __open_nocancel (open64_nocancel.c:39) ==668711== by 0x6513C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==668711== by 0x5D1F822: ??? ==668711== by 0x5D1F96F: ??? ==668711== by 0x8FD96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==668711== by 0x8FD9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==668711== by 0x8F8F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==668711== by 0x8F342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==668711== by 0x61DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==668711== by 0x6175D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==668711== by 0x4A95D38: PetscInitialize (pinit.c:924) ==668711== by 0x496CFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==668711== by 0x496D01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==668711== by 0x11BF1A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==668711== by 0x116F45: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==668711== by 0x119E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==668711== by 0x119D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==668711== by 0x11A3A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==668711== by 0x115275: main (TestHdf5DataWriter.cpp:19) ==668711== ==668711== Open file descriptor 115: ==668711== ==668711== ==668711== Open file descriptor 111: ==668711== ==668711== ==668711== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==668711== ==668711== ==668711== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==668711== ==668711== ==668711== ==668711== HEAP SUMMARY: ==668711== in use at exit: 700,754 bytes in 9,387 blocks ==668711== total heap usage: 117,282 allocs, 107,895 frees, 1,427,865,477 bytes allocated ==668711== ==668711== LEAK SUMMARY: ==668711== definitely lost: 0 bytes in 0 blocks ==668711== indirectly lost: 0 bytes in 0 blocks ==668711== possibly lost: 0 bytes in 0 blocks ==668711== still reachable: 24 bytes in 2 blocks ==668711== suppressed: 700,730 bytes in 9,385 blocks ==668711== Reachable blocks (those to which a pointer was found) are not shown. ==668711== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==668711== ==668711== For lists of detected and suppressed errors, rerun with: -s ==668711== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)