==686533== Memcheck, a memory error detector ==686533== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==686533== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==686533== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==686533== Parent PID: 668451 ==686533== ==686533== Warning: invalid file descriptor -1 in syscall close() ==686533== ==686533== FILE DESCRIPTORS: 9 open (3 std) at exit. ==686533== Open file descriptor 12: ==686533== at 0xBD5D22D: pipe (pipe.c:29) ==686533== by 0x13F8507D: ??? ==686533== by 0xFC464CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==686533== by 0xB64D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==686533== by 0xB5E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==686533== by 0x9F28D38: PetscInitialize (pinit.c:924) ==686533== by 0x9D9BFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==686533== by 0x9D9C01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==686533== by 0x14A6CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==686533== by 0x141925: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==686533== by 0x144B18: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==686533== by 0x1449B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==686533== by 0x14504F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==686533== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==686533== ==686533== Open file descriptor 8: /dev/shm/open_mpi.0000 ==686533== at 0xBD61BCC: __open_nocancel (open64_nocancel.c:39) ==686533== by 0xBCE5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==686533== by 0x9DD0822: ??? ==686533== by 0x9DD096F: ??? ==686533== by 0xFCEB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==686533== by 0xFCEB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==686533== by 0xFCA1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==686533== by 0xFC462DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==686533== by 0xB64D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==686533== by 0xB5E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==686533== by 0x9F28D38: PetscInitialize (pinit.c:924) ==686533== by 0x9D9BFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==686533== by 0x9D9C01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==686533== by 0x14A6CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==686533== by 0x141925: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==686533== by 0x144B18: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==686533== by 0x1449B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==686533== by 0x14504F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==686533== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==686533== ==686533== Open file descriptor 115: ==686533== ==686533== ==686533== Open file descriptor 111: ==686533== ==686533== ==686533== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==686533== ==686533== ==686533== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==686533== ==686533== ==686533== ==686533== HEAP SUMMARY: ==686533== in use at exit: 701,150 bytes in 9,383 blocks ==686533== total heap usage: 6,629,704 allocs, 6,620,321 frees, 4,035,830,182 bytes allocated ==686533== ==686533== LEAK SUMMARY: ==686533== definitely lost: 0 bytes in 0 blocks ==686533== indirectly lost: 0 bytes in 0 blocks ==686533== possibly lost: 0 bytes in 0 blocks ==686533== still reachable: 24 bytes in 2 blocks ==686533== suppressed: 701,126 bytes in 9,381 blocks ==686533== Reachable blocks (those to which a pointer was found) are not shown. ==686533== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==686533== ==686533== For lists of detected and suppressed errors, rerun with: -s ==686533== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)