==683990== Memcheck, a memory error detector ==683990== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==683990== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==683990== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==683990== Parent PID: 668451 ==683990== ==683990== ==683990== FILE DESCRIPTORS: 9 open (3 std) at exit. ==683990== Open file descriptor 12: ==683990== at 0x100EF22D: pipe (pipe.c:29) ==683990== by 0x18A0707D: ??? ==683990== by 0x13F6A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==683990== by 0xF912418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==683990== by 0xF8ABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==683990== by 0xE582D38: PetscInitialize (pinit.c:924) ==683990== by 0xE459FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==683990== by 0xE45A01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==683990== by 0x1299FD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==683990== by 0x124BA5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==683990== by 0x127222: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==683990== by 0x1270C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==683990== by 0x127759: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==683990== by 0x122ED5: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==683990== ==683990== Open file descriptor 8: /dev/shm/open_mpi.0000 ==683990== at 0x100F3BCC: __open_nocancel (open64_nocancel.c:39) ==683990== by 0x10077C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==683990== by 0xF80C822: ??? ==683990== by 0xF80C96F: ??? ==683990== by 0x1400F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==683990== by 0x1400F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==683990== by 0x13FC5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==683990== by 0x13F6A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==683990== by 0xF912418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==683990== by 0xF8ABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==683990== by 0xE582D38: PetscInitialize (pinit.c:924) ==683990== by 0xE459FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==683990== by 0xE45A01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==683990== by 0x1299FD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==683990== by 0x124BA5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==683990== by 0x127222: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==683990== by 0x1270C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==683990== by 0x127759: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==683990== by 0x122ED5: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==683990== ==683990== Open file descriptor 115: ==683990== ==683990== ==683990== Open file descriptor 111: ==683990== ==683990== ==683990== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==683990== ==683990== ==683990== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==683990== ==683990== ==683990== ==683990== HEAP SUMMARY: ==683990== in use at exit: 700,754 bytes in 9,378 blocks ==683990== total heap usage: 1,401,123 allocs, 1,391,745 frees, 1,413,584,549 bytes allocated ==683990== ==683990== LEAK SUMMARY: ==683990== definitely lost: 0 bytes in 0 blocks ==683990== indirectly lost: 0 bytes in 0 blocks ==683990== possibly lost: 0 bytes in 0 blocks ==683990== still reachable: 56 bytes in 3 blocks ==683990== suppressed: 700,698 bytes in 9,375 blocks ==683990== Reachable blocks (those to which a pointer was found) are not shown. ==683990== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==683990== ==683990== For lists of detected and suppressed errors, rerun with: -s ==683990== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)