==799103== Memcheck, a memory error detector ==799103== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==799103== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==799103== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==799103== Parent PID: 796951 ==799103== ==799103== ==799103== FILE DESCRIPTORS: 9 open (3 std) at exit. ==799103== Open file descriptor 12: ==799103== at 0xEC3722D: pipe (pipe.c:29) ==799103== by 0x18A0507D: ??? ==799103== by 0x140084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==799103== by 0x108D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==799103== by 0x1086FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==799103== by 0xF566D38: PetscInitialize (pinit.c:924) ==799103== by 0xE458FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==799103== by 0xE45901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==799103== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==799103== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==799103== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==799103== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==799103== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==799103== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==799103== ==799103== Open file descriptor 8: /dev/shm/open_mpi.0000 ==799103== at 0xEC3BBCC: __open_nocancel (open64_nocancel.c:39) ==799103== by 0xEBBFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==799103== by 0xE48D822: ??? ==799103== by 0xE48D96F: ??? ==799103== by 0x140AD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==799103== by 0x140AD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==799103== by 0x14063922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==799103== by 0x140082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==799103== by 0x108D6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==799103== by 0x1086FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==799103== by 0xF566D38: PetscInitialize (pinit.c:924) ==799103== by 0xE458FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==799103== by 0xE45901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==799103== by 0x13285A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==799103== by 0x12D813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==799103== by 0x12FFCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==799103== by 0x12FEC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==799103== by 0x1304DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==799103== by 0x12C015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==799103== ==799103== Open file descriptor 116: ==799103== ==799103== ==799103== Open file descriptor 112: ==799103== ==799103== ==799103== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==799103== ==799103== ==799103== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==799103== ==799103== ==799103== ==799103== HEAP SUMMARY: ==799103== in use at exit: 700,686 bytes in 9,374 blocks ==799103== total heap usage: 6,678,129 allocs, 6,668,755 frees, 9,011,159,817 bytes allocated ==799103== ==799103== LEAK SUMMARY: ==799103== definitely lost: 0 bytes in 0 blocks ==799103== indirectly lost: 0 bytes in 0 blocks ==799103== possibly lost: 0 bytes in 0 blocks ==799103== still reachable: 56 bytes in 3 blocks ==799103== suppressed: 700,630 bytes in 9,371 blocks ==799103== Reachable blocks (those to which a pointer was found) are not shown. ==799103== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==799103== ==799103== For lists of detected and suppressed errors, rerun with: -s ==799103== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)