==908415== Memcheck, a memory error detector ==908415== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==908415== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==908415== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==908415== Parent PID: 908152 ==908415== ==908415== ==908415== FILE DESCRIPTORS: 9 open (3 std) at exit. ==908415== Open file descriptor 12: ==908415== at 0x645422D: pipe (pipe.c:29) ==908415== by 0xAF1407D: ??? ==908415== by 0x8F344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==908415== by 0x664E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==908415== by 0x65E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==908415== by 0x4A95D38: PetscInitialize (pinit.c:924) ==908415== by 0x496CFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==908415== by 0x496D01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==908415== by 0x11BC14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==908415== by 0x11712B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==908415== by 0x119C82: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==908415== by 0x119B22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==908415== by 0x11A1B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==908415== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==908415== ==908415== Open file descriptor 8: /dev/shm/open_mpi.0000 ==908415== at 0x6458BCC: __open_nocancel (open64_nocancel.c:39) ==908415== by 0x63DCC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==908415== by 0x5D1F822: ??? ==908415== by 0x5D1F96F: ??? ==908415== by 0x8FD96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==908415== by 0x8FD9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==908415== by 0x8F8F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==908415== by 0x8F342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==908415== by 0x664E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==908415== by 0x65E7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==908415== by 0x4A95D38: PetscInitialize (pinit.c:924) ==908415== by 0x496CFCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==908415== by 0x496D01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==908415== by 0x11BC14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==908415== by 0x11712B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==908415== by 0x119C82: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==908415== by 0x119B22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==908415== by 0x11A1B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==908415== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==908415== ==908415== Open file descriptor 116: ==908415== ==908415== ==908415== Open file descriptor 112: ==908415== ==908415== ==908415== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==908415== ==908415== ==908415== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==908415== ==908415== ==908415== ==908415== HEAP SUMMARY: ==908415== in use at exit: 700,754 bytes in 9,387 blocks ==908415== total heap usage: 60,803 allocs, 51,416 frees, 1,363,855,837 bytes allocated ==908415== ==908415== LEAK SUMMARY: ==908415== definitely lost: 0 bytes in 0 blocks ==908415== indirectly lost: 0 bytes in 0 blocks ==908415== possibly lost: 0 bytes in 0 blocks ==908415== still reachable: 24 bytes in 2 blocks ==908415== suppressed: 700,730 bytes in 9,385 blocks ==908415== Reachable blocks (those to which a pointer was found) are not shown. ==908415== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==908415== ==908415== For lists of detected and suppressed errors, rerun with: -s ==908415== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)