==1067251== Memcheck, a memory error detector ==1067251== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1067251== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1067251== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1067251== Parent PID: 1049211 ==1067251== ==1067251== Warning: invalid file descriptor -1 in syscall close() ==1067251== ==1067251== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1067251== Open file descriptor 12: ==1067251== at 0xBD5B22D: pipe (pipe.c:29) ==1067251== by 0x13F8307D: ??? ==1067251== by 0xFC444CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1067251== by 0xB64B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1067251== by 0xB5E4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1067251== by 0x9F26D38: PetscInitialize (pinit.c:924) ==1067251== by 0x9D99FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1067251== by 0x9D9A01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1067251== by 0x14A6CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1067251== by 0x141925: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1067251== by 0x144B18: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1067251== by 0x1449B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1067251== by 0x14504F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1067251== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1067251== ==1067251== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1067251== at 0xBD5FBCC: __open_nocancel (open64_nocancel.c:39) ==1067251== by 0xBCE3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1067251== by 0x9DCE822: ??? ==1067251== by 0x9DCE96F: ??? ==1067251== by 0xFCE96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1067251== by 0xFCE9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1067251== by 0xFC9F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1067251== by 0xFC442DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1067251== by 0xB64B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1067251== by 0xB5E4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1067251== by 0x9F26D38: PetscInitialize (pinit.c:924) ==1067251== by 0x9D99FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1067251== by 0x9D9A01D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1067251== by 0x14A6CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1067251== by 0x141925: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1067251== by 0x144B18: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1067251== by 0x1449B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1067251== by 0x14504F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1067251== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1067251== ==1067251== Open file descriptor 116: ==1067251== ==1067251== ==1067251== Open file descriptor 112: ==1067251== ==1067251== ==1067251== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1067251== ==1067251== ==1067251== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1067251== ==1067251== ==1067251== ==1067251== HEAP SUMMARY: ==1067251== in use at exit: 701,152 bytes in 9,383 blocks ==1067251== total heap usage: 6,629,711 allocs, 6,620,328 frees, 4,035,830,297 bytes allocated ==1067251== ==1067251== LEAK SUMMARY: ==1067251== definitely lost: 0 bytes in 0 blocks ==1067251== indirectly lost: 0 bytes in 0 blocks ==1067251== possibly lost: 0 bytes in 0 blocks ==1067251== still reachable: 24 bytes in 2 blocks ==1067251== suppressed: 701,128 bytes in 9,381 blocks ==1067251== Reachable blocks (those to which a pointer was found) are not shown. ==1067251== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1067251== ==1067251== For lists of detected and suppressed errors, rerun with: -s ==1067251== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 126 from 32)