==1051193== Memcheck, a memory error detector ==1051193== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1051193== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1051193== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==1051193== Parent PID: 1049211 ==1051193== ==1051193== ==1051193== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1051193== Open file descriptor 12: ==1051193== at 0x1012E22D: pipe (pipe.c:29) ==1051193== by 0x18A0307D: ??? ==1051193== by 0x13F664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1051193== by 0xF951418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1051193== by 0xF8EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1051193== by 0xE5E1D38: PetscInitialize (pinit.c:924) ==1051193== by 0xE456FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1051193== by 0xE45701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1051193== by 0x1FF501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1051193== by 0x1F9477: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1051193== by 0x1FC78C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1051193== by 0x1FC688: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1051193== by 0x1FCC9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1051193== by 0x1F7C35: main (TestOffLatticeSimulation3d.cpp:18) ==1051193== ==1051193== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1051193== at 0x10132BCC: __open_nocancel (open64_nocancel.c:39) ==1051193== by 0x100B6C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1051193== by 0xE48B822: ??? ==1051193== by 0xE48B96F: ??? ==1051193== by 0x1400D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1051193== by 0x1400D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1051193== by 0x13FC3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1051193== by 0x13F662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1051193== by 0xF951418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1051193== by 0xF8EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1051193== by 0xE5E1D38: PetscInitialize (pinit.c:924) ==1051193== by 0xE456FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1051193== by 0xE45701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1051193== by 0x1FF501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1051193== by 0x1F9477: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1051193== by 0x1FC78C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1051193== by 0x1FC688: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1051193== by 0x1FCC9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1051193== by 0x1F7C35: main (TestOffLatticeSimulation3d.cpp:18) ==1051193== ==1051193== Open file descriptor 116: ==1051193== ==1051193== ==1051193== Open file descriptor 112: ==1051193== ==1051193== ==1051193== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==1051193== ==1051193== ==1051193== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1051193== ==1051193== ==1051193== ==1051193== HEAP SUMMARY: ==1051193== in use at exit: 700,759 bytes in 9,378 blocks ==1051193== total heap usage: 856,188 allocs, 846,810 frees, 1,519,104,387 bytes allocated ==1051193== ==1051193== LEAK SUMMARY: ==1051193== definitely lost: 0 bytes in 0 blocks ==1051193== indirectly lost: 0 bytes in 0 blocks ==1051193== possibly lost: 0 bytes in 0 blocks ==1051193== still reachable: 56 bytes in 3 blocks ==1051193== suppressed: 700,703 bytes in 9,375 blocks ==1051193== Reachable blocks (those to which a pointer was found) are not shown. ==1051193== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1051193== ==1051193== For lists of detected and suppressed errors, rerun with: -s ==1051193== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)