==1063971== Memcheck, a memory error detector ==1063971== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1063971== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1063971== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==1063971== Parent PID: 1049211 ==1063971== ==1063971== ==1063971== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1063971== Open file descriptor 12: ==1063971== at 0xEFD322D: pipe (pipe.c:29) ==1063971== by 0x18A0407D: ??? ==1063971== by 0x140074CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1063971== by 0x108D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1063971== by 0x1086DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1063971== by 0xF564D38: PetscInitialize (pinit.c:924) ==1063971== by 0xE7F2FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1063971== by 0xE7F301D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1063971== by 0x13594A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1063971== by 0x1304DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1063971== by 0x133160: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1063971== by 0x133000: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1063971== by 0x133697: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1063971== by 0x12E7D5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==1063971== ==1063971== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1063971== at 0xEFD7BCC: __open_nocancel (open64_nocancel.c:39) ==1063971== by 0xEF5BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1063971== by 0xE827822: ??? ==1063971== by 0xE82796F: ??? ==1063971== by 0x140AC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1063971== by 0x140AC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1063971== by 0x14062922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1063971== by 0x140072DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1063971== by 0x108D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1063971== by 0x1086DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1063971== by 0xF564D38: PetscInitialize (pinit.c:924) ==1063971== by 0xE7F2FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1063971== by 0xE7F301D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1063971== by 0x13594A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1063971== by 0x1304DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1063971== by 0x133160: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1063971== by 0x133000: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1063971== by 0x133697: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1063971== by 0x12E7D5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==1063971== ==1063971== Open file descriptor 116: ==1063971== ==1063971== ==1063971== Open file descriptor 112: ==1063971== ==1063971== ==1063971== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==1063971== ==1063971== ==1063971== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1063971== ==1063971== ==1063971== ==1063971== HEAP SUMMARY: ==1063971== in use at exit: 700,759 bytes in 9,378 blocks ==1063971== total heap usage: 2,374,127 allocs, 2,364,749 frees, 1,794,486,282 bytes allocated ==1063971== ==1063971== LEAK SUMMARY: ==1063971== definitely lost: 0 bytes in 0 blocks ==1063971== indirectly lost: 0 bytes in 0 blocks ==1063971== possibly lost: 0 bytes in 0 blocks ==1063971== still reachable: 56 bytes in 3 blocks ==1063971== suppressed: 700,703 bytes in 9,375 blocks ==1063971== Reachable blocks (those to which a pointer was found) are not shown. ==1063971== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1063971== ==1063971== For lists of detected and suppressed errors, rerun with: -s ==1063971== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)