==1063987== Memcheck, a memory error detector ==1063987== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1063987== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1063987== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1063987== Parent PID: 1049211 ==1063987== ==1063987== ==1063987== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1063987== Open file descriptor 12: ==1063987== at 0xEC7922D: pipe (pipe.c:29) ==1063987== by 0x18A0307D: ??? ==1063987== by 0x140064CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1063987== by 0x108D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1063987== by 0x1086DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1063987== by 0xF564D38: PetscInitialize (pinit.c:924) ==1063987== by 0xE456FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1063987== by 0xE45701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1063987== by 0x1D69EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1063987== by 0x1CE2C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1063987== by 0x1D1B48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1063987== by 0x1D19E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1063987== by 0x1D207F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1063987== by 0x1CC5B5: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==1063987== ==1063987== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1063987== at 0xEC7DBCC: __open_nocancel (open64_nocancel.c:39) ==1063987== by 0xEC01C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1063987== by 0xE48B822: ??? ==1063987== by 0xE48B96F: ??? ==1063987== by 0x140AB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1063987== by 0x140AB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1063987== by 0x14061922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1063987== by 0x140062DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1063987== by 0x108D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1063987== by 0x1086DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1063987== by 0xF564D38: PetscInitialize (pinit.c:924) ==1063987== by 0xE456FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1063987== by 0xE45701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1063987== by 0x1D69EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1063987== by 0x1CE2C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1063987== by 0x1D1B48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1063987== by 0x1D19E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1063987== by 0x1D207F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1063987== by 0x1CC5B5: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==1063987== ==1063987== Open file descriptor 116: ==1063987== ==1063987== ==1063987== Open file descriptor 112: ==1063987== ==1063987== ==1063987== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==1063987== ==1063987== ==1063987== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1063987== ==1063987== ==1063987== ==1063987== HEAP SUMMARY: ==1063987== in use at exit: 700,704 bytes in 9,375 blocks ==1063987== total heap usage: 11,683,901 allocs, 11,674,526 frees, 2,223,637,639 bytes allocated ==1063987== ==1063987== LEAK SUMMARY: ==1063987== definitely lost: 0 bytes in 0 blocks ==1063987== indirectly lost: 0 bytes in 0 blocks ==1063987== possibly lost: 0 bytes in 0 blocks ==1063987== still reachable: 72 bytes in 4 blocks ==1063987== suppressed: 700,632 bytes in 9,371 blocks ==1063987== Reachable blocks (those to which a pointer was found) are not shown. ==1063987== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1063987== ==1063987== For lists of detected and suppressed errors, rerun with: -s ==1063987== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)