==1064722== Memcheck, a memory error detector ==1064722== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1064722== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1064722== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1064722== Parent PID: 1049211 ==1064722== ==1064722== ==1064722== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1064722== Open file descriptor 12: ==1064722== at 0x100EC22D: pipe (pipe.c:29) ==1064722== by 0x18A0307D: ??? ==1064722== by 0x13F664CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1064722== by 0xF90F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1064722== by 0xF8A8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1064722== by 0xE57FD38: PetscInitialize (pinit.c:924) ==1064722== by 0xE456FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1064722== by 0xE45701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1064722== by 0x1299FD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1064722== by 0x124BA5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1064722== by 0x127222: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1064722== by 0x1270C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1064722== by 0x127759: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1064722== by 0x122ED5: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1064722== ==1064722== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1064722== at 0x100F0BCC: __open_nocancel (open64_nocancel.c:39) ==1064722== by 0x10074C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1064722== by 0xF809822: ??? ==1064722== by 0xF80996F: ??? ==1064722== by 0x1400B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1064722== by 0x1400B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1064722== by 0x13FC1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1064722== by 0x13F662DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1064722== by 0xF90F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1064722== by 0xF8A8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1064722== by 0xE57FD38: PetscInitialize (pinit.c:924) ==1064722== by 0xE456FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1064722== by 0xE45701D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1064722== by 0x1299FD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1064722== by 0x124BA5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1064722== by 0x127222: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1064722== by 0x1270C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1064722== by 0x127759: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1064722== by 0x122ED5: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==1064722== ==1064722== Open file descriptor 116: ==1064722== ==1064722== ==1064722== Open file descriptor 112: ==1064722== ==1064722== ==1064722== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==1064722== ==1064722== ==1064722== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1064722== ==1064722== ==1064722== ==1064722== HEAP SUMMARY: ==1064722== in use at exit: 700,759 bytes in 9,378 blocks ==1064722== total heap usage: 1,401,130 allocs, 1,391,752 frees, 1,413,584,778 bytes allocated ==1064722== ==1064722== LEAK SUMMARY: ==1064722== definitely lost: 0 bytes in 0 blocks ==1064722== indirectly lost: 0 bytes in 0 blocks ==1064722== possibly lost: 0 bytes in 0 blocks ==1064722== still reachable: 56 bytes in 3 blocks ==1064722== suppressed: 700,703 bytes in 9,375 blocks ==1064722== Reachable blocks (those to which a pointer was found) are not shown. ==1064722== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1064722== ==1064722== For lists of detected and suppressed errors, rerun with: -s ==1064722== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)