==1110837== Memcheck, a memory error detector ==1110837== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1110837== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1110837== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==1110837== Parent PID: 1108645 ==1110837== ==1110837== ==1110837== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1110837== Open file descriptor 12: ==1110837== at 0xF01522D: pipe (pipe.c:29) ==1110837== by 0x18A0407D: ??? ==1110837== by 0x140074CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1110837== by 0x108D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1110837== by 0x1086DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1110837== by 0xF564D38: PetscInitialize (pinit.c:924) ==1110837== by 0xE7F2FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1110837== by 0xE7F301D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1110837== by 0x22565C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1110837== by 0x21ECDF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1110837== by 0x22284A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1110837== by 0x2226EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1110837== by 0x222D81: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1110837== by 0x21CF95: main (TestOffLatticeSimulationWithPdes.cpp:19) ==1110837== ==1110837== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1110837== at 0xF019BCC: __open_nocancel (open64_nocancel.c:39) ==1110837== by 0xEF9DC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1110837== by 0xE827822: ??? ==1110837== by 0xE82796F: ??? ==1110837== by 0x140AC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1110837== by 0x140AC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1110837== by 0x14062922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1110837== by 0x140072DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1110837== by 0x108D4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1110837== by 0x1086DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1110837== by 0xF564D38: PetscInitialize (pinit.c:924) ==1110837== by 0xE7F2FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1110837== by 0xE7F301D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1110837== by 0x22565C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1110837== by 0x21ECDF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1110837== by 0x22284A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1110837== by 0x2226EA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1110837== by 0x222D81: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1110837== by 0x21CF95: main (TestOffLatticeSimulationWithPdes.cpp:19) ==1110837== ==1110837== Open file descriptor 116: ==1110837== ==1110837== ==1110837== Open file descriptor 112: ==1110837== ==1110837== ==1110837== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==1110837== ==1110837== ==1110837== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1110837== ==1110837== ==1110837== ==1110837== HEAP SUMMARY: ==1110837== in use at exit: 700,688 bytes in 9,374 blocks ==1110837== total heap usage: 7,509,425 allocs, 7,500,051 frees, 2,662,269,316 bytes allocated ==1110837== ==1110837== LEAK SUMMARY: ==1110837== definitely lost: 0 bytes in 0 blocks ==1110837== indirectly lost: 0 bytes in 0 blocks ==1110837== possibly lost: 0 bytes in 0 blocks ==1110837== still reachable: 56 bytes in 3 blocks ==1110837== suppressed: 700,632 bytes in 9,371 blocks ==1110837== Reachable blocks (those to which a pointer was found) are not shown. ==1110837== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1110837== ==1110837== For lists of detected and suppressed errors, rerun with: -s ==1110837== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)