==1279943== Memcheck, a memory error detector ==1279943== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1279943== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1279943== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1279943== Parent PID: 1277417 ==1279943== ==1279943== ==1279943== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1279943== Open file descriptor 12: ==1279943== at 0xF0F722D: pipe (pipe.c:29) ==1279943== by 0x18A0507D: ??? ==1279943== by 0x141304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1279943== by 0x10D52418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1279943== by 0x10CEBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1279943== by 0xF9E2D38: PetscInitialize (pinit.c:924) ==1279943== by 0xE458FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1279943== by 0xE45901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1279943== by 0x1D25D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1279943== by 0x1CBF69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1279943== by 0x1CF704: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1279943== by 0x1CF5A4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1279943== by 0x1CFC3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1279943== by 0x1CA255: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1279943== ==1279943== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1279943== at 0xF0FBBCC: __open_nocancel (open64_nocancel.c:39) ==1279943== by 0xF07FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1279943== by 0xE48D822: ??? ==1279943== by 0xE48D96F: ??? ==1279943== by 0x141D56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1279943== by 0x141D5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1279943== by 0x1418B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1279943== by 0x141302DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1279943== by 0x10D52418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1279943== by 0x10CEBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1279943== by 0xF9E2D38: PetscInitialize (pinit.c:924) ==1279943== by 0xE458FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1279943== by 0xE45901D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1279943== by 0x1D25D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1279943== by 0x1CBF69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1279943== by 0x1CF704: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1279943== by 0x1CF5A4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1279943== by 0x1CFC3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1279943== by 0x1CA255: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==1279943== ==1279943== Open file descriptor 116: ==1279943== ==1279943== ==1279943== Open file descriptor 112: ==1279943== ==1279943== ==1279943== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==1279943== ==1279943== ==1279943== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1279943== ==1279943== ==1279943== ==1279943== HEAP SUMMARY: ==1279943== in use at exit: 700,688 bytes in 9,374 blocks ==1279943== total heap usage: 7,097,299 allocs, 7,087,925 frees, 8,099,004,018 bytes allocated ==1279943== ==1279943== LEAK SUMMARY: ==1279943== definitely lost: 0 bytes in 0 blocks ==1279943== indirectly lost: 0 bytes in 0 blocks ==1279943== possibly lost: 0 bytes in 0 blocks ==1279943== still reachable: 56 bytes in 3 blocks ==1279943== suppressed: 700,632 bytes in 9,371 blocks ==1279943== Reachable blocks (those to which a pointer was found) are not shown. ==1279943== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1279943== ==1279943== For lists of detected and suppressed errors, rerun with: -s ==1279943== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)