==1351659== Memcheck, a memory error detector ==1351659== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1351659== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1351659== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1351659== Parent PID: 1336167 ==1351659== ==1351659== ==1351659== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1351659== Open file descriptor 12: ==1351659== at 0xEEEC22D: pipe (pipe.c:29) ==1351659== by 0x18A0507D: ??? ==1351659== by 0x1400C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1351659== by 0x107EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1351659== by 0x10788D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1351659== by 0xF47DD38: PetscInitialize (pinit.c:924) ==1351659== by 0xE7F4FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1351659== by 0xE7F501D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1351659== by 0x11BA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1351659== by 0x117333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1351659== by 0x11961E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1351659== by 0x119519: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1351659== by 0x119B2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1351659== by 0x115B35: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1351659== ==1351659== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1351659== at 0xEEF0BCC: __open_nocancel (open64_nocancel.c:39) ==1351659== by 0xEE74C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1351659== by 0xE829822: ??? ==1351659== by 0xE82996F: ??? ==1351659== by 0x140B16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1351659== by 0x140B1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1351659== by 0x14067922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1351659== by 0x1400C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1351659== by 0x107EF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1351659== by 0x10788D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1351659== by 0xF47DD38: PetscInitialize (pinit.c:924) ==1351659== by 0xE7F4FCF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1351659== by 0xE7F501D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1351659== by 0x11BA12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1351659== by 0x117333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1351659== by 0x11961E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1351659== by 0x119519: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1351659== by 0x119B2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1351659== by 0x115B35: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1351659== ==1351659== Open file descriptor 116: ==1351659== ==1351659== ==1351659== Open file descriptor 112: ==1351659== ==1351659== ==1351659== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1351659== ==1351659== ==1351659== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1351659== ==1351659== ==1351659== ==1351659== HEAP SUMMARY: ==1351659== in use at exit: 700,759 bytes in 9,378 blocks ==1351659== total heap usage: 2,085,950 allocs, 2,076,572 frees, 1,689,938,181 bytes allocated ==1351659== ==1351659== LEAK SUMMARY: ==1351659== definitely lost: 0 bytes in 0 blocks ==1351659== indirectly lost: 0 bytes in 0 blocks ==1351659== possibly lost: 0 bytes in 0 blocks ==1351659== still reachable: 56 bytes in 3 blocks ==1351659== suppressed: 700,703 bytes in 9,375 blocks ==1351659== Reachable blocks (those to which a pointer was found) are not shown. ==1351659== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1351659== ==1351659== For lists of detected and suppressed errors, rerun with: -s ==1351659== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)