==1393774== Memcheck, a memory error detector ==1393774== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1393774== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1393774== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info ==1393774== Parent PID: 1375558 ==1393774== ==1393774== ==1393774== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1393774== Open file descriptor 12: ==1393774== at 0xA7A622D: pipe (pipe.c:29) ==1393774== by 0x1430807D: ??? ==1393774== by 0xFB0C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1393774== by 0xBE9E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1393774== by 0xBE37D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1393774== by 0xAB2ED38: PetscInitialize (pinit.c:924) ==1393774== by 0xA09215B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1393774== by 0xA0921A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1393774== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1393774== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1393774== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1393774== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1393774== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1393774== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) ==1393774== ==1393774== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1393774== at 0xA7AABCC: __open_nocancel (open64_nocancel.c:39) ==1393774== by 0xA72EC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1393774== by 0xA0C7822: ??? ==1393774== by 0xA0C796F: ??? ==1393774== by 0xFBB16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1393774== by 0xFBB1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1393774== by 0xFB67922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1393774== by 0xFB0C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1393774== by 0xBE9E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1393774== by 0xBE37D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1393774== by 0xAB2ED38: PetscInitialize (pinit.c:924) ==1393774== by 0xA09215B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1393774== by 0xA0921A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1393774== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1393774== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1393774== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1393774== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1393774== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1393774== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) ==1393774== ==1393774== Open file descriptor 116: ==1393774== ==1393774== ==1393774== Open file descriptor 112: ==1393774== ==1393774== ==1393774== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt ==1393774== ==1393774== ==1393774== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1393774== ==1393774== ==1393774== ==1393774== HEAP SUMMARY: ==1393774== in use at exit: 707,424 bytes in 9,495 blocks ==1393774== total heap usage: 321,888 allocs, 312,393 frees, 1,413,189,371 bytes allocated ==1393774== ==1393774== 448 bytes in 8 blocks are definitely lost in loss record 52 of 77 ==1393774== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1393774== by 0x9238095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1393774== by 0x923632E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1393774== by 0x92392D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1393774== by 0x92392F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1393774== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1393774== by 0x4006567: call_init (dl-init.c:33) ==1393774== by 0x4006567: _dl_init (dl-init.c:117) ==1393774== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1393774== by 0x3: ??? ==1393774== by 0x1FFF0002E2: ??? ==1393774== by 0x1FFF00035C: ??? ==1393774== by 0x1FFF00036A: ??? ==1393774== by 0x1FFF000377: ??? ==1393774== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1393774== LEAK SUMMARY: ==1393774== definitely lost: 448 bytes in 8 blocks ==1393774== indirectly lost: 0 bytes in 0 blocks ==1393774== possibly lost: 0 bytes in 0 blocks ==1393774== still reachable: 5,848 bytes in 106 blocks ==1393774== suppressed: 701,128 bytes in 9,381 blocks ==1393774== Reachable blocks (those to which a pointer was found) are not shown. ==1393774== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1393774== ==1393774== For lists of detected and suppressed errors, rerun with: -s ==1393774== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 40 from 32)