==1376312== Memcheck, a memory error detector
==1376312== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==1376312== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==1376312== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryFftInterface -malloc_debug -malloc_dump -memory_info
==1376312== Parent PID: 1375558
==1376312== 
==1376312== 
==1376312== FILE DESCRIPTORS: 9 open (3 std) at exit.
==1376312== Open file descriptor 12:
==1376312==    at 0x80E722D: pipe (pipe.c:29)
==1376312==    by 0x100A407D: ???
==1376312==    by 0xB9E14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1376312==    by 0x79F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1376312==    by 0x798CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1376312==    by 0x6661D38: PetscInitialize (pinit.c:924)
==1376312==    by 0x653815B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1376312==    by 0x65381A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1376312==    by 0x11A1E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==1376312==    by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1376312==    by 0x11825A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1376312==    by 0x118155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1376312==    by 0x118769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1376312==    by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18)
==1376312== 
==1376312== Open file descriptor 8: /dev/shm/open_mpi.0000
==1376312==    at 0x80EBBCC: __open_nocancel (open64_nocancel.c:39)
==1376312==    by 0x806FC4F: shm_open@@GLIBC_2.34 (shm_open.c:40)
==1376312==    by 0x78EB822: ???
==1376312==    by 0x78EB96F: ???
==1376312==    by 0xBA866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1376312==    by 0xBA86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1376312==    by 0xBA3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==1376312==    by 0xB9E12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==1376312==    by 0x79F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1376312==    by 0x798CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==1376312==    by 0x6661D38: PetscInitialize (pinit.c:924)
==1376312==    by 0x653815B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==1376312==    by 0x65381A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==1376312==    by 0x11A1E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==1376312==    by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==1376312==    by 0x11825A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==1376312==    by 0x118155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1376312==    by 0x118769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1376312==    by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18)
==1376312== 
==1376312== Open file descriptor 116:
==1376312==    <inherited from parent>
==1376312== 
==1376312== Open file descriptor 112:
==1376312==    <inherited from parent>
==1376312== 
==1376312== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryFftInterface_valgrind.txt
==1376312==    <inherited from parent>
==1376312== 
==1376312== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==1376312==    <inherited from parent>
==1376312== 
==1376312== 
==1376312== HEAP SUMMARY:
==1376312==     in use at exit: 1,501,831 bytes in 9,600 blocks
==1376312==   total heap usage: 50,884 allocs, 41,284 frees, 1,361,963,384 bytes allocated
==1376312== 
==1376312== 448 bytes in 8 blocks are definitely lost in loss record 112 of 143
==1376312==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1376312==    by 0x5751095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442)
==1376312==    by 0x574F32E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14)
==1376312==    by 0x57522D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18)
==1376312==    by 0x57522F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064)
==1376312==    by 0x400647D: call_init.part.0 (dl-init.c:70)
==1376312==    by 0x4006567: call_init (dl-init.c:33)
==1376312==    by 0x4006567: _dl_init (dl-init.c:117)
==1376312==    by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2)
==1376312==    by 0x3: ???
==1376312==    by 0x1FFF0002F2: ???
==1376312==    by 0x1FFF000365: ???
==1376312==    by 0x1FFF000373: ???
==1376312==    by 0x1FFF000380: ???
==1376312== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN13OpenSimplex2S17initLatticePointsEv
   fun:_ZN13OpenSimplex2S11InitializerC1Ev
   fun:_Z41__static_initialization_and_destruction_0ii
   fun:_GLOBAL__sub_I_OpenSimplex2S.cpp
   fun:call_init.part.0
   fun:call_init
   fun:_dl_init
   obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2
   obj:*
   obj:*
   obj:*
   obj:*
   obj:*
}
==1376312== 2,832 (752 direct, 2,080 indirect) bytes in 1 blocks are definitely lost in loss record 134 of 143
==1376312==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1376312==    by 0x11A6D1: TestImmersedBoundaryFftInterface::TestConstructor() (TestImmersedBoundaryFftInterface.hpp:69)
==1376312==    by 0x11BCF0: TestDescription_TestImmersedBoundaryFftInterface_TestConstructor::runTest() (TestImmersedBoundaryFftInterface.cpp:30)
==1376312==    by 0x11560A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1376312==    by 0x118508: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1376312==    by 0x1183ED: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1376312==    by 0x118293: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1376312==    by 0x118155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1376312==    by 0x118769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1376312==    by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18)
==1376312== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN32TestImmersedBoundaryFftInterface15TestConstructorEv
   fun:_ZN64TestDescription_TestImmersedBoundaryFftInterface_TestConstructor7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1376312== 262,144 bytes in 1 blocks are possibly lost in loss record 137 of 143
==1376312==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1376312==    by 0x11FC9D: __gnu_cxx::new_allocator<double>::allocate(unsigned long, void const*) (new_allocator.h:127)
==1376312==    by 0x5A9E9BD: boost::multi_array<double, 3ul, std::allocator<double> >::allocate_space() (multi_array.hpp:545)
==1376312==    by 0x5A9F400: boost::multi_array<double, 3ul, std::allocator<double> >::multi_array(boost::detail::multi_array::extent_gen<3ul> const&, boost::general_storage_order<3ul> const&, std::allocator<double> const&) (multi_array.hpp:226)
==1376312==    by 0x5A9D575: boost::multi_array<double, 3ul, std::allocator<double> >::resize(boost::detail::multi_array::extent_gen<3ul> const&) (multi_array.hpp:458)
==1376312==    by 0x5B247A7: ImmersedBoundaryMesh<2u, 2u>::ImmersedBoundaryMesh(std::vector<Node<2u>*, std::allocator<Node<2u>*> >, std::vector<ImmersedBoundaryElement<2u, 2u>*, std::allocator<ImmersedBoundaryElement<2u, 2u>*> >, std::vector<ImmersedBoundaryElement<1u, 2u>*, std::allocator<ImmersedBoundaryElement<1u, 2u>*> >, unsigned int, unsigned int) (ImmersedBoundaryMesh.cpp:65)
==1376312==    by 0x11A6F5: TestImmersedBoundaryFftInterface::TestConstructor() (TestImmersedBoundaryFftInterface.hpp:69)
==1376312==    by 0x11BCF0: TestDescription_TestImmersedBoundaryFftInterface_TestConstructor::runTest() (TestImmersedBoundaryFftInterface.cpp:30)
==1376312==    by 0x11560A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1376312==    by 0x118508: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1376312==    by 0x1183ED: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1376312==    by 0x118293: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1376312==    by 0x118155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1376312==    by 0x118769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1376312==    by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18)
==1376312== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: possible
   fun:_Znwm
   fun:_ZN9__gnu_cxx13new_allocatorIdE8allocateEmPKv
   fun:_ZN5boost11multi_arrayIdLm3ESaIdEE14allocate_spaceEv
   fun:_ZN5boost11multi_arrayIdLm3ESaIdEEC1ERKNS_6detail11multi_array10extent_genILm3EEERKNS_21general_storage_orderILm3EEERKS1_
   fun:_ZN5boost11multi_arrayIdLm3ESaIdEE6resizeERKNS_6detail11multi_array10extent_genILm3EEE
   fun:_ZN20ImmersedBoundaryMeshILj2ELj2EEC1ESt6vectorIP4NodeILj2EESaIS4_EES1_IP23ImmersedBoundaryElementILj2ELj2EESaIS9_EES1_IPS7_ILj1ELj2EESaISD_EEjj
   fun:_ZN32TestImmersedBoundaryFftInterface15TestConstructorEv
   fun:_ZN64TestDescription_TestImmersedBoundaryFftInterface_TestConstructor7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1376312== 264,976 (752 direct, 264,224 indirect) bytes in 1 blocks are definitely lost in loss record 140 of 143
==1376312==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1376312==    by 0x11AEC6: TestImmersedBoundaryFftInterface::TestFftExecuteForward() (TestImmersedBoundaryFftInterface.hpp:95)
==1376312==    by 0x11BD5A: TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteForward::runTest() (TestImmersedBoundaryFftInterface.cpp:36)
==1376312==    by 0x11560A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1376312==    by 0x118508: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1376312==    by 0x1183ED: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1376312==    by 0x118293: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1376312==    by 0x118155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1376312==    by 0x118769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1376312==    by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18)
==1376312== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN32TestImmersedBoundaryFftInterface21TestFftExecuteForwardEv
   fun:_ZN70TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteForward7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1376312== 264,976 (752 direct, 264,224 indirect) bytes in 1 blocks are definitely lost in loss record 141 of 143
==1376312==    at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so)
==1376312==    by 0x11B688: TestImmersedBoundaryFftInterface::TestFftExecuteInverse() (TestImmersedBoundaryFftInterface.hpp:126)
==1376312==    by 0x11BDC4: TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteInverse::runTest() (TestImmersedBoundaryFftInterface.cpp:42)
==1376312==    by 0x11560A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96)
==1376312==    by 0x118508: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74)
==1376312==    by 0x1183ED: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61)
==1376312==    by 0x118293: CxxTest::TestRunner::runWorld() (TestRunner.h:46)
==1376312==    by 0x118155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==1376312==    by 0x118769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==1376312==    by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18)
==1376312== 
{
   <insert_a_suppression_name_here>
   Memcheck:Leak
   match-leak-kinds: definite
   fun:_Znwm
   fun:_ZN32TestImmersedBoundaryFftInterface21TestFftExecuteInverseEv
   fun:_ZN70TestDescription_TestImmersedBoundaryFftInterface_TestFftExecuteInverse7runTestEv
   fun:_ZN7CxxTest19RealTestDescription3runEv
   fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE
   fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==1376312== LEAK SUMMARY:
==1376312==    definitely lost: 2,704 bytes in 11 blocks
==1376312==    indirectly lost: 530,528 bytes in 107 blocks
==1376312==      possibly lost: 262,144 bytes in 1 blocks
==1376312==    still reachable: 5,848 bytes in 106 blocks
==1376312==         suppressed: 700,607 bytes in 9,375 blocks
==1376312== Reachable blocks (those to which a pointer was found) are not shown.
==1376312== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==1376312== 
==1376312== For lists of detected and suppressed errors, rerun with: -s
==1376312== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 35 from 35)