==1393703== Memcheck, a memory error detector ==1393703== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1393703== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1393703== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==1393703== Parent PID: 1375558 ==1393703== ==1393703== Warning: invalid file descriptor -1 in syscall close() ==1393703== ==1393703== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1393703== Open file descriptor 12: ==1393703== at 0xC0E322D: pipe (pipe.c:29) ==1393703== by 0x1430B07D: ??? ==1393703== by 0xFFCC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1393703== by 0xB9D3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1393703== by 0xB96CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1393703== by 0xA2AED38: PetscInitialize (pinit.c:924) ==1393703== by 0xA12115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1393703== by 0xA1211A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1393703== by 0x14A6CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1393703== by 0x141925: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1393703== by 0x144B18: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1393703== by 0x1449B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1393703== by 0x14504F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1393703== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1393703== ==1393703== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1393703== at 0xC0E7BCC: __open_nocancel (open64_nocancel.c:39) ==1393703== by 0xC06BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1393703== by 0xA156822: ??? ==1393703== by 0xA15696F: ??? ==1393703== by 0x100716DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1393703== by 0x10071938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1393703== by 0x10027922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1393703== by 0xFFCC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1393703== by 0xB9D3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1393703== by 0xB96CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1393703== by 0xA2AED38: PetscInitialize (pinit.c:924) ==1393703== by 0xA12115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1393703== by 0xA1211A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1393703== by 0x14A6CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1393703== by 0x141925: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1393703== by 0x144B18: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1393703== by 0x1449B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1393703== by 0x14504F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1393703== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==1393703== ==1393703== Open file descriptor 116: ==1393703== ==1393703== ==1393703== Open file descriptor 112: ==1393703== ==1393703== ==1393703== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==1393703== ==1393703== ==1393703== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1393703== ==1393703== ==1393703== ==1393703== HEAP SUMMARY: ==1393703== in use at exit: 707,424 bytes in 9,495 blocks ==1393703== total heap usage: 6,625,477 allocs, 6,615,982 frees, 4,034,531,031 bytes allocated ==1393703== ==1393703== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==1393703== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1393703== by 0x9238095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1393703== by 0x923632E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1393703== by 0x92392D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1393703== by 0x92392F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1393703== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1393703== by 0x4006567: call_init (dl-init.c:33) ==1393703== by 0x4006567: _dl_init (dl-init.c:117) ==1393703== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1393703== by 0x3: ??? ==1393703== by 0x1FFF000306: ??? ==1393703== by 0x1FFF00036F: ??? ==1393703== by 0x1FFF00037D: ??? ==1393703== by 0x1FFF00038A: ??? ==1393703== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1393703== LEAK SUMMARY: ==1393703== definitely lost: 448 bytes in 8 blocks ==1393703== indirectly lost: 0 bytes in 0 blocks ==1393703== possibly lost: 0 bytes in 0 blocks ==1393703== still reachable: 5,848 bytes in 106 blocks ==1393703== suppressed: 701,128 bytes in 9,381 blocks ==1393703== Reachable blocks (those to which a pointer was found) are not shown. ==1393703== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1393703== ==1393703== For lists of detected and suppressed errors, rerun with: -s ==1393703== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 128 from 34)