==1376943== Memcheck, a memory error detector ==1376943== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1376943== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1376943== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info ==1376943== Parent PID: 1375558 ==1376943== ==1376943== ==1376943== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1376943== Open file descriptor 12: ==1376943== at 0x1115B22D: pipe (pipe.c:29) ==1376943== by 0x1977C07D: ??? ==1376943== by 0x14CE34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1376943== by 0x10A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1376943== by 0x109FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1376943== by 0xF6F5D38: PetscInitialize (pinit.c:924) ==1376943== by 0xF56A15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1376943== by 0xF56A1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1376943== by 0x132D57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1376943== by 0x12D6F5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1376943== by 0x130394: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1376943== by 0x130234: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1376943== by 0x1308CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1376943== by 0x12BA25: main (TestParabolicBoxDomainPdeModifier.cpp:19) ==1376943== ==1376943== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1376943== at 0x1115FBCC: __open_nocancel (open64_nocancel.c:39) ==1376943== by 0x110E3C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1376943== by 0xF59F822: ??? ==1376943== by 0xF59F96F: ??? ==1376943== by 0x14D886DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1376943== by 0x14D88938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1376943== by 0x14D3E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1376943== by 0x14CE32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1376943== by 0x10A65418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1376943== by 0x109FED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1376943== by 0xF6F5D38: PetscInitialize (pinit.c:924) ==1376943== by 0xF56A15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1376943== by 0xF56A1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1376943== by 0x132D57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1376943== by 0x12D6F5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1376943== by 0x130394: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1376943== by 0x130234: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1376943== by 0x1308CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1376943== by 0x12BA25: main (TestParabolicBoxDomainPdeModifier.cpp:19) ==1376943== ==1376943== Open file descriptor 116: ==1376943== ==1376943== ==1376943== Open file descriptor 112: ==1376943== ==1376943== ==1376943== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicBoxDomainPdeModifier_valgrind.txt ==1376943== ==1376943== ==1376943== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1376943== ==1376943== ==1376943== ==1376943== HEAP SUMMARY: ==1376943== in use at exit: 707,031 bytes in 9,490 blocks ==1376943== total heap usage: 2,614,683 allocs, 2,605,193 frees, 1,634,629,784 bytes allocated ==1376943== ==1376943== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==1376943== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1376943== by 0xE783095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1376943== by 0xE78132E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1376943== by 0xE7842D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1376943== by 0xE7842F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1376943== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1376943== by 0x4006567: call_init (dl-init.c:33) ==1376943== by 0x4006567: _dl_init (dl-init.c:117) ==1376943== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1376943== by 0x3: ??? ==1376943== by 0x1FFF0002E2: ??? ==1376943== by 0x1FFF00035C: ??? ==1376943== by 0x1FFF00036A: ??? ==1376943== by 0x1FFF000377: ??? ==1376943== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1376943== LEAK SUMMARY: ==1376943== definitely lost: 448 bytes in 8 blocks ==1376943== indirectly lost: 0 bytes in 0 blocks ==1376943== possibly lost: 0 bytes in 0 blocks ==1376943== still reachable: 5,880 bytes in 107 blocks ==1376943== suppressed: 700,703 bytes in 9,375 blocks ==1376943== Reachable blocks (those to which a pointer was found) are not shown. ==1376943== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1376943== ==1376943== For lists of detected and suppressed errors, rerun with: -s ==1376943== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)