==1391063== Memcheck, a memory error detector ==1391063== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1391063== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1391063== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1391063== Parent PID: 1375558 ==1391063== ==1391063== ==1391063== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1391063== Open file descriptor 12: ==1391063== at 0x10D7D22D: pipe (pipe.c:29) ==1391063== by 0x1977B07D: ??? ==1391063== by 0x14CF34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1391063== by 0x10687418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1391063== by 0x10620D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1391063== by 0xF2F7D38: PetscInitialize (pinit.c:924) ==1391063== by 0xF1CE15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1391063== by 0xF1CE1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1391063== by 0x1213C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1391063== by 0x11C9A5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1391063== by 0x11EF94: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1391063== by 0x11EE34: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1391063== by 0x11F4CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1391063== by 0x11ACD5: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==1391063== ==1391063== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1391063== at 0x10D81BCC: __open_nocancel (open64_nocancel.c:39) ==1391063== by 0x10D05C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1391063== by 0x10581822: ??? ==1391063== by 0x1058196F: ??? ==1391063== by 0x14D986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1391063== by 0x14D98938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1391063== by 0x14D4E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1391063== by 0x14CF32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1391063== by 0x10687418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1391063== by 0x10620D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1391063== by 0xF2F7D38: PetscInitialize (pinit.c:924) ==1391063== by 0xF1CE15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1391063== by 0xF1CE1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1391063== by 0x1213C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1391063== by 0x11C9A5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1391063== by 0x11EF94: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1391063== by 0x11EE34: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1391063== by 0x11F4CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1391063== by 0x11ACD5: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==1391063== ==1391063== Open file descriptor 116: ==1391063== ==1391063== ==1391063== Open file descriptor 112: ==1391063== ==1391063== ==1391063== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==1391063== ==1391063== ==1391063== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1391063== ==1391063== ==1391063== ==1391063== HEAP SUMMARY: ==1391063== in use at exit: 706,960 bytes in 9,486 blocks ==1391063== total heap usage: 3,337,049 allocs, 3,327,563 frees, 2,281,799,491 bytes allocated ==1391063== ==1391063== 448 bytes in 8 blocks are definitely lost in loss record 49 of 77 ==1391063== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1391063== by 0xE3E5095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1391063== by 0xE3E332E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1391063== by 0xE3E62D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1391063== by 0xE3E62F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1391063== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1391063== by 0x4006567: call_init (dl-init.c:33) ==1391063== by 0x4006567: _dl_init (dl-init.c:117) ==1391063== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1391063== by 0x3: ??? ==1391063== by 0x1FFF0002D6: ??? ==1391063== by 0x1FFF000356: ??? ==1391063== by 0x1FFF000364: ??? ==1391063== by 0x1FFF000371: ??? ==1391063== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1391063== LEAK SUMMARY: ==1391063== definitely lost: 448 bytes in 8 blocks ==1391063== indirectly lost: 0 bytes in 0 blocks ==1391063== possibly lost: 0 bytes in 0 blocks ==1391063== still reachable: 5,880 bytes in 107 blocks ==1391063== suppressed: 700,632 bytes in 9,371 blocks ==1391063== Reachable blocks (those to which a pointer was found) are not shown. ==1391063== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1391063== ==1391063== For lists of detected and suppressed errors, rerun with: -s ==1391063== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 34 from 34)