==1420133== Memcheck, a memory error detector ==1420133== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1420133== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1420133== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info ==1420133== Parent PID: 1419039 ==1420133== ==1420133== ==1420133== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1420133== Open file descriptor 12: ==1420133== at 0x732422D: pipe (pipe.c:29) ==1420133== by 0x104B607D: ??? ==1420133== by 0xC5E74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1420133== by 0x8D99418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1420133== by 0x8D32D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1420133== by 0x7672D38: PetscInitialize (pinit.c:924) ==1420133== by 0x68D815B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1420133== by 0x68D81A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1420133== by 0x1213CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1420133== by 0x11CA13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1420133== by 0x11F466: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1420133== by 0x11F361: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1420133== by 0x11F975: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1420133== by 0x11B215: main (TestHdf5Converters.cpp:18) ==1420133== ==1420133== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1420133== at 0x7328BCC: __open_nocancel (open64_nocancel.c:39) ==1420133== by 0x72ACC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1420133== by 0x690D822: ??? ==1420133== by 0x690D96F: ??? ==1420133== by 0xC68C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1420133== by 0xC68C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1420133== by 0xC642922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1420133== by 0xC5E72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1420133== by 0x8D99418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1420133== by 0x8D32D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1420133== by 0x7672D38: PetscInitialize (pinit.c:924) ==1420133== by 0x68D815B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1420133== by 0x68D81A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1420133== by 0x1213CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1420133== by 0x11CA13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1420133== by 0x11F466: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1420133== by 0x11F361: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1420133== by 0x11F975: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1420133== by 0x11B215: main (TestHdf5Converters.cpp:18) ==1420133== ==1420133== Open file descriptor 116: ==1420133== ==1420133== ==1420133== Open file descriptor 112: ==1420133== ==1420133== ==1420133== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt ==1420133== ==1420133== ==1420133== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1420133== ==1420133== ==1420133== ==1420133== HEAP SUMMARY: ==1420133== in use at exit: 706,935 bytes in 9,489 blocks ==1420133== total heap usage: 208,290 allocs, 198,801 frees, 1,409,610,253 bytes allocated ==1420133== ==1420133== 448 bytes in 8 blocks are definitely lost in loss record 51 of 76 ==1420133== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1420133== by 0x5AED095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1420133== by 0x5AEB32E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1420133== by 0x5AEE2D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1420133== by 0x5AEE2F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1420133== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1420133== by 0x4006567: call_init (dl-init.c:33) ==1420133== by 0x4006567: _dl_init (dl-init.c:117) ==1420133== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1420133== by 0x3: ??? ==1420133== by 0x1FFF000306: ??? ==1420133== by 0x1FFF00036A: ??? ==1420133== by 0x1FFF000378: ??? ==1420133== by 0x1FFF000385: ??? ==1420133== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1420133== LEAK SUMMARY: ==1420133== definitely lost: 448 bytes in 8 blocks ==1420133== indirectly lost: 0 bytes in 0 blocks ==1420133== possibly lost: 0 bytes in 0 blocks ==1420133== still reachable: 5,848 bytes in 106 blocks ==1420133== suppressed: 700,639 bytes in 9,375 blocks ==1420133== Reachable blocks (those to which a pointer was found) are not shown. ==1420133== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1420133== ==1420133== For lists of detected and suppressed errors, rerun with: -s ==1420133== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 34 from 34)