==1419832== Memcheck, a memory error detector ==1419832== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1419832== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1419832== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryPalisadeMeshGenerator -malloc_debug -malloc_dump -memory_info ==1419832== Parent PID: 1419039 ==1419832== ==1419832== ==1419832== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1419832== Open file descriptor 12: ==1419832== at 0x80E922D: pipe (pipe.c:29) ==1419832== by 0x100A607D: ??? ==1419832== by 0xB9E14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1419832== by 0x79F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1419832== by 0x798ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1419832== by 0x6663D38: PetscInitialize (pinit.c:924) ==1419832== by 0x653A15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1419832== by 0x653A1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1419832== by 0x113C33: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1419832== by 0x10F4E5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1419832== by 0x111CB0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1419832== by 0x111B50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1419832== by 0x1121E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1419832== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==1419832== ==1419832== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1419832== at 0x80EDBCC: __open_nocancel (open64_nocancel.c:39) ==1419832== by 0x8071C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1419832== by 0x78ED822: ??? ==1419832== by 0x78ED96F: ??? ==1419832== by 0xBA866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1419832== by 0xBA86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1419832== by 0xBA3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1419832== by 0xB9E12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1419832== by 0x79F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1419832== by 0x798ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1419832== by 0x6663D38: PetscInitialize (pinit.c:924) ==1419832== by 0x653A15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1419832== by 0x653A1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1419832== by 0x113C33: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1419832== by 0x10F4E5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1419832== by 0x111CB0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1419832== by 0x111B50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1419832== by 0x1121E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1419832== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==1419832== ==1419832== Open file descriptor 116: ==1419832== ==1419832== ==1419832== Open file descriptor 112: ==1419832== ==1419832== ==1419832== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt ==1419832== ==1419832== ==1419832== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1419832== ==1419832== ==1419832== ==1419832== HEAP SUMMARY: ==1419832== in use at exit: 730,167 bytes in 9,658 blocks ==1419832== total heap usage: 57,773 allocs, 48,115 frees, 1,369,052,713 bytes allocated ==1419832== ==1419832== 448 bytes in 8 blocks are definitely lost in loss record 51 of 84 ==1419832== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1419832== by 0x5751095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1419832== by 0x574F32E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1419832== by 0x57522D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1419832== by 0x57522F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1419832== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1419832== by 0x4006567: call_init (dl-init.c:33) ==1419832== by 0x4006567: _dl_init (dl-init.c:117) ==1419832== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1419832== by 0x3: ??? ==1419832== by 0x1FFF0002D6: ??? ==1419832== by 0x1FFF000352: ??? ==1419832== by 0x1FFF000360: ??? ==1419832== by 0x1FFF00036D: ??? ==1419832== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1419832== 20,712 (128 direct, 20,584 indirect) bytes in 1 blocks are definitely lost in loss record 79 of 84 ==1419832== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1419832== by 0x5BBCD2A: ImmersedBoundaryPalisadeMeshGenerator::ImmersedBoundaryPalisadeMeshGenerator(unsigned int, unsigned int, double, double, double, bool, bool, bool, unsigned int, double) (ImmersedBoundaryPalisadeMeshGenerator.cpp:224) ==1419832== by 0x1144A9: TestImmersedBoundaryPalisadeMeshGenerator::TestCellGenerationExceptions() (TestImmersedBoundaryPalisadeMeshGenerator.hpp:79) ==1419832== by 0x1146C2: TestDescription_TestImmersedBoundaryPalisadeMeshGenerator_TestCellGenerationExceptions::runTest() (TestImmersedBoundaryPalisadeMeshGenerator.cpp:43) ==1419832== by 0x10EAE0: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1419832== by 0x111F5E: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1419832== by 0x111E43: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1419832== by 0x111CE9: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1419832== by 0x111B50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1419832== by 0x1121E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1419832== by 0x10D815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) ==1419832== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN37ImmersedBoundaryPalisadeMeshGeneratorC1Ejjdddbbbjd fun:_ZN41TestImmersedBoundaryPalisadeMeshGenerator28TestCellGenerationExceptionsEv fun:_ZN86TestDescription_TestImmersedBoundaryPalisadeMeshGenerator_TestCellGenerationExceptions7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1419832== LEAK SUMMARY: ==1419832== definitely lost: 576 bytes in 9 blocks ==1419832== indirectly lost: 20,584 bytes in 167 blocks ==1419832== possibly lost: 0 bytes in 0 blocks ==1419832== still reachable: 8,400 bytes in 107 blocks ==1419832== suppressed: 700,607 bytes in 9,375 blocks ==1419832== Reachable blocks (those to which a pointer was found) are not shown. ==1419832== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1419832== ==1419832== For lists of detected and suppressed errors, rerun with: -s ==1419832== ERROR SUMMARY: 2 errors from 2 contexts (suppressed: 37 from 37)