==1475932== Memcheck, a memory error detector ==1475932== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1475932== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1475932== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==1475932== Parent PID: 1457562 ==1475932== ==1475932== ==1475932== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1475932== Open file descriptor 12: ==1475932== at 0xA7A922D: pipe (pipe.c:29) ==1475932== by 0x1430C07D: ??? ==1475932== by 0xFB104CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1475932== by 0xBEA1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1475932== by 0xBE3AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1475932== by 0xAB31D38: PetscInitialize (pinit.c:924) ==1475932== by 0xA09515B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1475932== by 0xA0951A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1475932== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1475932== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1475932== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1475932== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1475932== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1475932== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==1475932== ==1475932== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1475932== at 0xA7ADBCC: __open_nocancel (open64_nocancel.c:39) ==1475932== by 0xA731C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1475932== by 0xA0CA822: ??? ==1475932== by 0xA0CA96F: ??? ==1475932== by 0xFBB56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1475932== by 0xFBB5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1475932== by 0xFB6B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1475932== by 0xFB102DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1475932== by 0xBEA1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1475932== by 0xBE3AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1475932== by 0xAB31D38: PetscInitialize (pinit.c:924) ==1475932== by 0xA09515B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1475932== by 0xA0951A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1475932== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1475932== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1475932== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1475932== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1475932== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1475932== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==1475932== ==1475932== Open file descriptor 116: ==1475932== ==1475932== ==1475932== Open file descriptor 112: ==1475932== ==1475932== ==1475932== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==1475932== ==1475932== ==1475932== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1475932== ==1475932== ==1475932== ==1475932== HEAP SUMMARY: ==1475932== in use at exit: 707,495 bytes in 9,499 blocks ==1475932== total heap usage: 836,630 allocs, 827,131 frees, 1,458,409,794 bytes allocated ==1475932== ==1475932== 448 bytes in 8 blocks are definitely lost in loss record 55 of 83 ==1475932== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1475932== by 0x9238095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1475932== by 0x923632E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1475932== by 0x92392D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1475932== by 0x92392F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1475932== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1475932== by 0x4006567: call_init (dl-init.c:33) ==1475932== by 0x4006567: _dl_init (dl-init.c:117) ==1475932== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1475932== by 0x3: ??? ==1475932== by 0x1FFF000302: ??? ==1475932== by 0x1FFF000367: ??? ==1475932== by 0x1FFF000375: ??? ==1475932== by 0x1FFF000382: ??? ==1475932== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1475932== LEAK SUMMARY: ==1475932== definitely lost: 448 bytes in 8 blocks ==1475932== indirectly lost: 0 bytes in 0 blocks ==1475932== possibly lost: 0 bytes in 0 blocks ==1475932== still reachable: 5,848 bytes in 106 blocks ==1475932== suppressed: 701,199 bytes in 9,385 blocks ==1475932== Reachable blocks (those to which a pointer was found) are not shown. ==1475932== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1475932== ==1475932== For lists of detected and suppressed errors, rerun with: -s ==1475932== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 64 from 38)