==1473417== Memcheck, a memory error detector ==1473417== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1473417== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1473417== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==1473417== Parent PID: 1457562 ==1473417== ==1473417== ==1473417== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1473417== Open file descriptor 12: ==1473417== at 0x112B422D: pipe (pipe.c:29) ==1473417== by 0x1B44107D: ??? ==1473417== by 0x166414CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1473417== by 0x12F0F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1473417== by 0x12EA8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1473417== by 0x11B9FD38: PetscInitialize (pinit.c:924) ==1473417== by 0x10A9115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1473417== by 0x10A911A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1473417== by 0x23B7D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1473417== by 0x2319A9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1473417== by 0x2360DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1473417== by 0x235F7A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1473417== by 0x236611: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1473417== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1473417== ==1473417== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1473417== at 0x112B8BCC: __open_nocancel (open64_nocancel.c:39) ==1473417== by 0x1123CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1473417== by 0x10AC6822: ??? ==1473417== by 0x10AC696F: ??? ==1473417== by 0x166E66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1473417== by 0x166E6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1473417== by 0x1669C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1473417== by 0x166412DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1473417== by 0x12F0F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1473417== by 0x12EA8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1473417== by 0x11B9FD38: PetscInitialize (pinit.c:924) ==1473417== by 0x10A9115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1473417== by 0x10A911A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1473417== by 0x23B7D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1473417== by 0x2319A9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1473417== by 0x2360DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1473417== by 0x235F7A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1473417== by 0x236611: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1473417== by 0x22FC95: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==1473417== ==1473417== Open file descriptor 116: ==1473417== ==1473417== ==1473417== Open file descriptor 112: ==1473417== ==1473417== ==1473417== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==1473417== ==1473417== ==1473417== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1473417== ==1473417== ==1473417== ==1473417== HEAP SUMMARY: ==1473417== in use at exit: 706,976 bytes in 9,486 blocks ==1473417== total heap usage: 6,310,313 allocs, 6,300,827 frees, 2,072,797,212 bytes allocated ==1473417== ==1473417== 448 bytes in 8 blocks are definitely lost in loss record 49 of 77 ==1473417== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1473417== by 0xFCA7095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1473417== by 0xFCA532E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1473417== by 0xFCA82D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1473417== by 0xFCA82F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1473417== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1473417== by 0x4006567: call_init (dl-init.c:33) ==1473417== by 0x4006567: _dl_init (dl-init.c:117) ==1473417== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1473417== by 0x3: ??? ==1473417== by 0x1FFF0002C6: ??? ==1473417== by 0x1FFF00034A: ??? ==1473417== by 0x1FFF000358: ??? ==1473417== by 0x1FFF000365: ??? ==1473417== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1473417== LEAK SUMMARY: ==1473417== definitely lost: 448 bytes in 8 blocks ==1473417== indirectly lost: 0 bytes in 0 blocks ==1473417== possibly lost: 0 bytes in 0 blocks ==1473417== still reachable: 5,880 bytes in 107 blocks ==1473417== suppressed: 700,648 bytes in 9,371 blocks ==1473417== Reachable blocks (those to which a pointer was found) are not shown. ==1473417== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1473417== ==1473417== For lists of detected and suppressed errors, rerun with: -s ==1473417== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 33 from 33)