==1458335== Memcheck, a memory error detector ==1458335== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1458335== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1458335== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMesh -malloc_debug -malloc_dump -memory_info ==1458335== Parent PID: 1457562 ==1458335== ==1458335== ==1458335== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1458335== Open file descriptor 12: ==1458335== at 0x82A422D: pipe (pipe.c:29) ==1458335== by 0x100A807D: ??? ==1458335== by 0xB9E14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1458335== by 0x7AC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1458335== by 0x7A60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1458335== by 0x6757D38: PetscInitialize (pinit.c:924) ==1458335== by 0x65CA15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1458335== by 0x65CA1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1458335== by 0x161521: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1458335== by 0x15BD29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1458335== by 0x15EEAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1458335== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1458335== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1458335== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1458335== ==1458335== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1458335== at 0x82A8BCC: __open_nocancel (open64_nocancel.c:39) ==1458335== by 0x822CC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1458335== by 0x65FF822: ??? ==1458335== by 0x65FF96F: ??? ==1458335== by 0xBA866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1458335== by 0xBA86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1458335== by 0xBA3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1458335== by 0xB9E12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1458335== by 0x7AC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1458335== by 0x7A60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1458335== by 0x6757D38: PetscInitialize (pinit.c:924) ==1458335== by 0x65CA15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1458335== by 0x65CA1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1458335== by 0x161521: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1458335== by 0x15BD29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1458335== by 0x15EEAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1458335== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1458335== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1458335== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1458335== ==1458335== Open file descriptor 116: ==1458335== ==1458335== ==1458335== Open file descriptor 112: ==1458335== ==1458335== ==1458335== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMesh_valgrind.txt ==1458335== ==1458335== ==1458335== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1458335== ==1458335== ==1458335== ==1458335== HEAP SUMMARY: ==1458335== in use at exit: 1,239,967 bytes in 9,557 blocks ==1458335== total heap usage: 104,917 allocs, 95,360 frees, 1,386,892,608 bytes allocated ==1458335== ==1458335== 184 (40 direct, 144 indirect) bytes in 1 blocks are definitely lost in loss record 56 of 108 ==1458335== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1458335== by 0x19879F: __gnu_cxx::new_allocator >::allocate(unsigned long, void const*) (new_allocator.h:127) ==1458335== by 0x197F37: std::allocator_traits > >::allocate(std::allocator >&, unsigned long) (alloc_traits.h:464) ==1458335== by 0x197AAA: std::_Rb_tree, std::less, std::allocator >::_M_get_node() (stl_tree.h:561) ==1458335== by 0x196DB9: std::_Rb_tree_node* std::_Rb_tree, std::less, std::allocator >::_M_create_node(unsigned int const&) (stl_tree.h:611) ==1458335== by 0x1957BC: std::_Rb_tree_node* std::_Rb_tree, std::less, std::allocator >::_Alloc_node::operator()(unsigned int const&) const (stl_tree.h:529) ==1458335== by 0x193D11: std::_Rb_tree_iterator std::_Rb_tree, std::less, std::allocator >::_M_insert_, std::less, std::allocator >::_Alloc_node>(std::_Rb_tree_node_base*, std::_Rb_tree_node_base*, unsigned int const&, std::_Rb_tree, std::less, std::allocator >::_Alloc_node&) (stl_tree.h:1784) ==1458335== by 0x5892257: std::pair, bool> std::_Rb_tree, std::less, std::allocator >::_M_insert_unique(unsigned int const&) (stl_tree.h:2129) ==1458335== by 0x588E4BF: std::set, std::allocator >::insert(unsigned int const&) (stl_set.h:512) ==1458335== by 0x5A09853: Node<2u>::AddElement(unsigned int) (Node.cpp:270) ==1458335== by 0x163994: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:177) ==1458335== by 0x1873A8: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==1458335== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1458335== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1458335== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1458335== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1458335== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1458335== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1458335== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1458335== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN9__gnu_cxx13new_allocatorISt13_Rb_tree_nodeIjEE8allocateEmPKv fun:_ZNSt16allocator_traitsISaISt13_Rb_tree_nodeIjEEE8allocateERS2_m fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE11_M_get_nodeEv fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE14_M_create_nodeIJRKjEEEPSt13_Rb_tree_nodeIjEDpOT_ fun:_ZNKSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE11_Alloc_nodeclIRKjEEPSt13_Rb_tree_nodeIjEOT_ fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE10_M_insert_IRKjNS5_11_Alloc_nodeEEESt17_Rb_tree_iteratorIjEPSt18_Rb_tree_node_baseSD_OT_RT0_ fun:_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_ fun:_ZNSt3setIjSt4lessIjESaIjEE6insertERKj fun:_ZN4NodeILj2EE10AddElementEj fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1458335== 448 bytes in 8 blocks are definitely lost in loss record 75 of 108 ==1458335== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1458335== by 0x5751095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1458335== by 0x574F32E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1458335== by 0x57522D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1458335== by 0x57522F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1458335== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1458335== by 0x4006567: call_init (dl-init.c:33) ==1458335== by 0x4006567: _dl_init (dl-init.c:117) ==1458335== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1458335== by 0x3: ??? ==1458335== by 0x1FFF0002F6: ??? ==1458335== by 0x1FFF000361: ??? ==1458335== by 0x1FFF00036F: ??? ==1458335== by 0x1FFF00037C: ??? ==1458335== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1458335== 696 (576 direct, 120 indirect) bytes in 4 blocks are definitely lost in loss record 92 of 108 ==1458335== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1458335== by 0x163870: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:173) ==1458335== by 0x1873A8: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==1458335== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1458335== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1458335== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1458335== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1458335== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1458335== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1458335== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1458335== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1458335== 880 (720 direct, 160 indirect) bytes in 5 blocks are definitely lost in loss record 93 of 108 ==1458335== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1458335== by 0x16380A: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:172) ==1458335== by 0x1873A8: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==1458335== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1458335== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1458335== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1458335== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1458335== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1458335== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1458335== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1458335== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1458335== 880 (720 direct, 160 indirect) bytes in 5 blocks are definitely lost in loss record 94 of 108 ==1458335== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1458335== by 0x1638D6: TestImmersedBoundaryMesh::TestImmersedBoundaryElementAndLaminaIterators() (TestImmersedBoundaryMesh.hpp:174) ==1458335== by 0x1873A8: TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators::runTest() (TestImmersedBoundaryMesh.cpp:61) ==1458335== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1458335== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1458335== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1458335== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1458335== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1458335== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1458335== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1458335== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh45TestImmersedBoundaryElementAndLaminaIteratorsEv fun:_ZN86TestDescription_TestImmersedBoundaryMesh_TestImmersedBoundaryElementAndLaminaIterators7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1458335== 262,896 (752 direct, 262,144 indirect) bytes in 1 blocks are definitely lost in loss record 105 of 108 ==1458335== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1458335== by 0x162049: TestImmersedBoundaryMesh::TestSetupFluidVelocityGrids() (TestImmersedBoundaryMesh.hpp:85) ==1458335== by 0x187200: TestDescription_TestImmersedBoundaryMesh_TestSetupFluidVelocityGrids::runTest() (TestImmersedBoundaryMesh.cpp:37) ==1458335== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1458335== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1458335== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1458335== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1458335== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1458335== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1458335== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1458335== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh27TestSetupFluidVelocityGridsEv fun:_ZN68TestDescription_TestImmersedBoundaryMesh_TestSetupFluidVelocityGrids7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1458335== 264,976 (752 direct, 264,224 indirect) bytes in 1 blocks are definitely lost in loss record 106 of 108 ==1458335== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1458335== by 0x1619CD: TestImmersedBoundaryMesh::TestSolveNodeAndElementMapping() (TestImmersedBoundaryMesh.hpp:74) ==1458335== by 0x187196: TestDescription_TestImmersedBoundaryMesh_TestSolveNodeAndElementMapping::runTest() (TestImmersedBoundaryMesh.cpp:31) ==1458335== by 0x15B324: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==1458335== by 0x15F15C: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==1458335== by 0x15F041: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==1458335== by 0x15EEE7: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==1458335== by 0x15ED4F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1458335== by 0x15F3E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1458335== by 0x15A015: main (TestImmersedBoundaryMesh.cpp:19) ==1458335== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN24TestImmersedBoundaryMesh30TestSolveNodeAndElementMappingEv fun:_ZN71TestDescription_TestImmersedBoundaryMesh_TestSolveNodeAndElementMapping7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==1458335== LEAK SUMMARY: ==1458335== definitely lost: 4,008 bytes in 25 blocks ==1458335== indirectly lost: 526,952 bytes in 50 blocks ==1458335== possibly lost: 0 bytes in 0 blocks ==1458335== still reachable: 8,400 bytes in 107 blocks ==1458335== suppressed: 700,607 bytes in 9,375 blocks ==1458335== Reachable blocks (those to which a pointer was found) are not shown. ==1458335== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1458335== ==1458335== For lists of detected and suppressed errors, rerun with: -s ==1458335== ERROR SUMMARY: 7 errors from 7 contexts (suppressed: 34 from 34)