==1473961== Memcheck, a memory error detector ==1473961== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1473961== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1473961== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMatrixVentilationProblem -malloc_debug -malloc_dump -memory_info ==1473961== Parent PID: 1457562 ==1473961== ==1473961== ==1473961== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1473961== Open file descriptor 12: ==1473961== at 0x81BA22D: pipe (pipe.c:29) ==1473961== by 0x1078807D: ??? ==1473961== by 0xBFF94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1473961== by 0x83B4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1473961== by 0x834DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1473961== by 0x6784D38: PetscInitialize (pinit.c:924) ==1473961== by 0x665B15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1473961== by 0x665B1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1473961== by 0x11785A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1473961== by 0x1129D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1473961== by 0x1156FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1473961== by 0x11559E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1473961== by 0x115C35: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1473961== by 0x110B55: main (TestMatrixVentilationProblem.cpp:19) ==1473961== ==1473961== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1473961== at 0x81BEBCC: __open_nocancel (open64_nocancel.c:39) ==1473961== by 0x8142C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1473961== by 0x7A0E822: ??? ==1473961== by 0x7A0E96F: ??? ==1473961== by 0xC09E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1473961== by 0xC09E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1473961== by 0xC054922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1473961== by 0xBFF92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1473961== by 0x83B4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1473961== by 0x834DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1473961== by 0x6784D38: PetscInitialize (pinit.c:924) ==1473961== by 0x665B15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1473961== by 0x665B1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1473961== by 0x11785A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1473961== by 0x1129D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1473961== by 0x1156FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1473961== by 0x11559E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1473961== by 0x115C35: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1473961== by 0x110B55: main (TestMatrixVentilationProblem.cpp:19) ==1473961== ==1473961== Open file descriptor 116: ==1473961== ==1473961== ==1473961== Open file descriptor 112: ==1473961== ==1473961== ==1473961== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMatrixVentilationProblem_valgrind.txt ==1473961== ==1473961== ==1473961== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1473961== ==1473961== ==1473961== ==1473961== HEAP SUMMARY: ==1473961== in use at exit: 706,999 bytes in 9,489 blocks ==1473961== total heap usage: 139,732 allocs, 130,243 frees, 1,530,289,396 bytes allocated ==1473961== ==1473961== 448 bytes in 8 blocks are definitely lost in loss record 51 of 79 ==1473961== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1473961== by 0x586F095: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1473961== by 0x586D32E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1473961== by 0x58702D4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1473961== by 0x58702F9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1473961== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1473961== by 0x4006567: call_init (dl-init.c:33) ==1473961== by 0x4006567: _dl_init (dl-init.c:117) ==1473961== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1473961== by 0x3: ??? ==1473961== by 0x1FFF0002EE: ??? ==1473961== by 0x1FFF00035D: ??? ==1473961== by 0x1FFF00036B: ??? ==1473961== by 0x1FFF000378: ??? ==1473961== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1473961== LEAK SUMMARY: ==1473961== definitely lost: 448 bytes in 8 blocks ==1473961== indirectly lost: 0 bytes in 0 blocks ==1473961== possibly lost: 0 bytes in 0 blocks ==1473961== still reachable: 5,848 bytes in 106 blocks ==1473961== suppressed: 700,703 bytes in 9,375 blocks ==1473961== Reachable blocks (those to which a pointer was found) are not shown. ==1473961== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1473961== ==1473961== For lists of detected and suppressed errors, rerun with: -s ==1473961== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)