==1502909== Memcheck, a memory error detector ==1502909== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1502909== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1502909== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info ==1502909== Parent PID: 1501241 ==1502909== ==1502909== ==1502909== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1502909== Open file descriptor 12: ==1502909== at 0xDCCA22D: pipe (pipe.c:29) ==1502909== by 0x1976B07D: ??? ==1502909== by 0x14D6E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1502909== by 0x11554418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1502909== by 0x114EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1502909== by 0x101E4D38: PetscInitialize (pinit.c:924) ==1502909== by 0xD58E15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1502909== by 0xD58E1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1502909== by 0x132B76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1502909== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1502909== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1502909== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1502909== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1502909== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==1502909== ==1502909== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1502909== at 0xDCCEBCC: __open_nocancel (open64_nocancel.c:39) ==1502909== by 0xDC52C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1502909== by 0xD5C3822: ??? ==1502909== by 0xD5C396F: ??? ==1502909== by 0x14E136DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1502909== by 0x14E13938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1502909== by 0x14DC9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1502909== by 0x14D6E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1502909== by 0x11554418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1502909== by 0x114EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1502909== by 0x101E4D38: PetscInitialize (pinit.c:924) ==1502909== by 0xD58E15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1502909== by 0xD58E1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1502909== by 0x132B76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1502909== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1502909== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1502909== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1502909== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1502909== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==1502909== ==1502909== Open file descriptor 116: ==1502909== ==1502909== ==1502909== Open file descriptor 112: ==1502909== ==1502909== ==1502909== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt ==1502909== ==1502909== ==1502909== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1502909== ==1502909== ==1502909== ==1502909== HEAP SUMMARY: ==1502909== in use at exit: 707,031 bytes in 9,490 blocks ==1502909== total heap usage: 58,099 allocs, 48,609 frees, 1,354,289,518 bytes allocated ==1502909== ==1502909== 448 bytes in 8 blocks are definitely lost in loss record 55 of 83 ==1502909== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1502909== by 0xF2A9975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1502909== by 0xF2A7C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1502909== by 0xF2AABB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1502909== by 0xF2AABD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1502909== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1502909== by 0x4006567: call_init (dl-init.c:33) ==1502909== by 0x4006567: _dl_init (dl-init.c:117) ==1502909== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1502909== by 0x3: ??? ==1502909== by 0x1FFF0002FA: ??? ==1502909== by 0x1FFF000364: ??? ==1502909== by 0x1FFF000372: ??? ==1502909== by 0x1FFF00037F: ??? ==1502909== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1502909== LEAK SUMMARY: ==1502909== definitely lost: 448 bytes in 8 blocks ==1502909== indirectly lost: 0 bytes in 0 blocks ==1502909== possibly lost: 0 bytes in 0 blocks ==1502909== still reachable: 5,880 bytes in 107 blocks ==1502909== suppressed: 700,703 bytes in 9,375 blocks ==1502909== Reachable blocks (those to which a pointer was found) are not shown. ==1502909== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1502909== ==1502909== For lists of detected and suppressed errors, rerun with: -s ==1502909== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 40 from 40)