==1519631== Memcheck, a memory error detector ==1519631== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1519631== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1519631== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info ==1519631== Parent PID: 1501241 ==1519631== ==1519631== ==1519631== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1519631== Open file descriptor 12: ==1519631== at 0x892322D: pipe (pipe.c:29) ==1519631== by 0x142F807D: ??? ==1519631== by 0xEE3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1519631== by 0xA01D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1519631== by 0x9FB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1519631== by 0x8CADD38: PetscInitialize (pinit.c:924) ==1519631== by 0x821115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1519631== by 0x82111A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1519631== by 0x120390: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1519631== by 0x11AA65: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1519631== by 0x11E214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1519631== by 0x11E0B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1519631== by 0x11E74B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1519631== by 0x118D95: main (TestCardiacSimulation.cpp:19) ==1519631== ==1519631== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1519631== at 0x8927BCC: __open_nocancel (open64_nocancel.c:39) ==1519631== by 0x88ABC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1519631== by 0x8246822: ??? ==1519631== by 0x824696F: ??? ==1519631== by 0xEEE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1519631== by 0xEEE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1519631== by 0xEE98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1519631== by 0xEE3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1519631== by 0xA01D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1519631== by 0x9FB6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1519631== by 0x8CADD38: PetscInitialize (pinit.c:924) ==1519631== by 0x821115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1519631== by 0x82111A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1519631== by 0x120390: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1519631== by 0x11AA65: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1519631== by 0x11E214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1519631== by 0x11E0B4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1519631== by 0x11E74B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1519631== by 0x118D95: main (TestCardiacSimulation.cpp:19) ==1519631== ==1519631== Open file descriptor 116: ==1519631== ==1519631== ==1519631== Open file descriptor 112: ==1519631== ==1519631== ==1519631== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulation_valgrind.txt ==1519631== ==1519631== ==1519631== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1519631== ==1519631== ==1519631== ==1519631== HEAP SUMMARY: ==1519631== in use at exit: 714,748 bytes in 9,511 blocks ==1519631== total heap usage: 4,763,490 allocs, 4,753,979 frees, 2,850,266,264 bytes allocated ==1519631== ==1519631== 448 bytes in 8 blocks are definitely lost in loss record 65 of 94 ==1519631== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1519631== by 0xB9C5975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1519631== by 0xB9C3C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1519631== by 0xB9C6BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1519631== by 0xB9C6BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1519631== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1519631== by 0x4006567: call_init (dl-init.c:33) ==1519631== by 0x4006567: _dl_init (dl-init.c:117) ==1519631== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1519631== by 0x3: ??? ==1519631== by 0x1FFF0002FA: ??? ==1519631== by 0x1FFF000363: ??? ==1519631== by 0x1FFF000371: ??? ==1519631== by 0x1FFF00037E: ??? ==1519631== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1519631== LEAK SUMMARY: ==1519631== definitely lost: 448 bytes in 8 blocks ==1519631== indirectly lost: 0 bytes in 0 blocks ==1519631== possibly lost: 0 bytes in 0 blocks ==1519631== still reachable: 13,172 bytes in 122 blocks ==1519631== suppressed: 701,128 bytes in 9,381 blocks ==1519631== Reachable blocks (those to which a pointer was found) are not shown. ==1519631== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1519631== ==1519631== For lists of detected and suppressed errors, rerun with: -s ==1519631== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 230 from 33)