==1502475== Memcheck, a memory error detector ==1502475== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1502475== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1502475== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info ==1502475== Parent PID: 1501241 ==1502475== ==1502475== ==1502475== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1502475== Open file descriptor 12: ==1502475== at 0xEDF822D: pipe (pipe.c:29) ==1502475== by 0x1976B07D: ??? ==1502475== by 0x13CBB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1502475== by 0xEA49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1502475== by 0xE9E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1502475== by 0xD6B9D38: PetscInitialize (pinit.c:924) ==1502475== by 0xD58E15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1502475== by 0xD58E1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1502475== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1502475== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1502475== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1502475== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1502475== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1502475== by 0x113935: main (TestCellSrn.cpp:18) ==1502475== ==1502475== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1502475== at 0xEDFCBCC: __open_nocancel (open64_nocancel.c:39) ==1502475== by 0xED80C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1502475== by 0xE943822: ??? ==1502475== by 0xE94396F: ??? ==1502475== by 0x13D606DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1502475== by 0x13D60938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1502475== by 0x13D16922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1502475== by 0x13CBB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1502475== by 0xEA49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1502475== by 0xE9E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1502475== by 0xD6B9D38: PetscInitialize (pinit.c:924) ==1502475== by 0xD58E15B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1502475== by 0xD58E1A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1502475== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1502475== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1502475== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1502475== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1502475== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1502475== by 0x113935: main (TestCellSrn.cpp:18) ==1502475== ==1502475== Open file descriptor 116: ==1502475== ==1502475== ==1502475== Open file descriptor 112: ==1502475== ==1502475== ==1502475== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt ==1502475== ==1502475== ==1502475== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1502475== ==1502475== ==1502475== ==1502475== HEAP SUMMARY: ==1502475== in use at exit: 707,095 bytes in 9,491 blocks ==1502475== total heap usage: 65,692 allocs, 56,201 frees, 1,354,473,289 bytes allocated ==1502475== ==1502475== 448 bytes in 8 blocks are definitely lost in loss record 54 of 82 ==1502475== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1502475== by 0x103D7975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:442) ==1502475== by 0x103D5C0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:14) ==1502475== by 0x103D8BB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:18) ==1502475== by 0x103D8BD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1064) ==1502475== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1502475== by 0x4006567: call_init (dl-init.c:33) ==1502475== by 0x4006567: _dl_init (dl-init.c:117) ==1502475== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1502475== by 0x3: ??? ==1502475== by 0x1FFF000306: ??? ==1502475== by 0x1FFF00036A: ??? ==1502475== by 0x1FFF000378: ??? ==1502475== by 0x1FFF000385: ??? ==1502475== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1502475== LEAK SUMMARY: ==1502475== definitely lost: 448 bytes in 8 blocks ==1502475== indirectly lost: 0 bytes in 0 blocks ==1502475== possibly lost: 0 bytes in 0 blocks ==1502475== still reachable: 5,944 bytes in 108 blocks ==1502475== suppressed: 700,703 bytes in 9,375 blocks ==1502475== Reachable blocks (those to which a pointer was found) are not shown. ==1502475== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1502475== ==1502475== For lists of detected and suppressed errors, rerun with: -s ==1502475== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 37 from 37)