==1573681== Memcheck, a memory error detector ==1573681== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1573681== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1573681== Command: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellMutationStates -malloc_debug -malloc_dump -memory_info ==1573681== Parent PID: 1572417 ==1573681== ==1573681== ==1573681== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1573681== Open file descriptor 12: ==1573681== at 0xEE3D22D: pipe (pipe.c:29) ==1573681== by 0x1976D07D: ??? ==1573681== by 0x13CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1573681== by 0xEA8E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1573681== by 0xEA27D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1573681== by 0xD71ED38: PetscInitialize (pinit.c:924) ==1573681== by 0xD59115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1573681== by 0xD5911A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1573681== by 0x12CFB9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1573681== by 0x127F59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1573681== by 0x12A8E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1573681== by 0x12A782: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1573681== by 0x12AE19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1573681== by 0x126245: main (TestCellMutationStates.cpp:19) ==1573681== ==1573681== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1573681== at 0xEE41BCC: __open_nocancel (open64_nocancel.c:39) ==1573681== by 0xEDC5C4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1573681== by 0xD5C6822: ??? ==1573681== by 0xD5C696F: ??? ==1573681== by 0x13D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1573681== by 0x13D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1573681== by 0x13D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1573681== by 0x13CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1573681== by 0xEA8E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1573681== by 0xEA27D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1573681== by 0xD71ED38: PetscInitialize (pinit.c:924) ==1573681== by 0xD59115B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1573681== by 0xD5911A9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1573681== by 0x12CFB9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==1573681== by 0x127F59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1573681== by 0x12A8E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1573681== by 0x12A782: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1573681== by 0x12AE19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1573681== by 0x126245: main (TestCellMutationStates.cpp:19) ==1573681== ==1573681== Open file descriptor 116: ==1573681== ==1573681== ==1573681== Open file descriptor 112: ==1573681== ==1573681== ==1573681== Open file descriptor 4: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellMutationStates_valgrind.txt ==1573681== ==1573681== ==1573681== Open file descriptor 3: /home/github/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1573681== ==1573681== ==1573681== ==1573681== HEAP SUMMARY: ==1573681== in use at exit: 707,031 bytes in 9,490 blocks ==1573681== total heap usage: 55,506 allocs, 46,016 frees, 1,354,008,343 bytes allocated ==1573681== ==1573681== 448 bytes in 8 blocks are definitely lost in loss record 52 of 80 ==1573681== at 0x4849013: operator new(unsigned long) (in /usr/libexec/valgrind/vgpreload_memcheck-amd64-linux.so) ==1573681== by 0x1041C975: OpenSimplex2S::initLatticePoints() (OpenSimplex2S.cpp:462) ==1573681== by 0x1041AC0E: OpenSimplex2S::Initializer::Initializer() (OpenSimplex2S.cpp:34) ==1573681== by 0x1041DBB4: __static_initialization_and_destruction_0(int, int) (OpenSimplex2S.cpp:38) ==1573681== by 0x1041DBD9: _GLOBAL__sub_I_OpenSimplex2S.cpp (OpenSimplex2S.cpp:1084) ==1573681== by 0x400647D: call_init.part.0 (dl-init.c:70) ==1573681== by 0x4006567: call_init (dl-init.c:33) ==1573681== by 0x4006567: _dl_init (dl-init.c:117) ==1573681== by 0x40202E9: ??? (in /usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2) ==1573681== by 0x3: ??? ==1573681== by 0x1FFF0002EE: ??? ==1573681== by 0x1FFF00035D: ??? ==1573681== by 0x1FFF00036B: ??? ==1573681== by 0x1FFF000378: ??? ==1573681== { Memcheck:Leak match-leak-kinds: definite fun:_Znwm fun:_ZN13OpenSimplex2S17initLatticePointsEv fun:_ZN13OpenSimplex2S11InitializerC1Ev fun:_Z41__static_initialization_and_destruction_0ii fun:_GLOBAL__sub_I_OpenSimplex2S.cpp fun:call_init.part.0 fun:call_init fun:_dl_init obj:/usr/lib/x86_64-linux-gnu/ld-linux-x86-64.so.2 obj:* obj:* obj:* obj:* obj:* } ==1573681== LEAK SUMMARY: ==1573681== definitely lost: 448 bytes in 8 blocks ==1573681== indirectly lost: 0 bytes in 0 blocks ==1573681== possibly lost: 0 bytes in 0 blocks ==1573681== still reachable: 5,880 bytes in 107 blocks ==1573681== suppressed: 700,703 bytes in 9,375 blocks ==1573681== Reachable blocks (those to which a pointer was found) are not shown. ==1573681== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1573681== ==1573681== For lists of detected and suppressed errors, rerun with: -s ==1573681== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 40 from 40)